Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001350-TA|BGIBMGA001350-PA|IPR001251|Cellular
retinaldehyde-binding/triple function, C-terminal
(507 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr... 35 0.023
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 33 0.12
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 32 0.16
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 30 0.87
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces... 29 1.5
SPAC23H4.07c |srp102||signal recognition particle receptor beta ... 29 1.5
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch... 29 1.5
SPBC365.13c |hba1|caf1|Ran GTPase binding protein Hba1|Schizosac... 29 2.0
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac... 29 2.0
SPBC21.07c |ppk24||serine/threonine protein kinase Ppk24|Schizos... 29 2.0
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe... 28 3.5
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 28 3.5
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po... 28 3.5
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz... 27 4.6
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 4.6
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo... 27 4.6
SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces p... 27 4.6
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc... 27 4.6
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1... 27 6.1
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 27 6.1
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch... 27 8.1
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 27 8.1
>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 568
Score = 35.1 bits (77), Expect = 0.023
Identities = 30/94 (31%), Positives = 39/94 (41%), Gaps = 6/94 (6%)
Query: 266 LDSVSGCSMESEEEPVELDNARSCPDPRSEDDDDTKRSKST--NTVSESSDLIPEYSAAD 323
LDS+S S ESE E D S P P ED +DTK + T T ++ P +
Sbjct: 218 LDSLSVPSSESEVSEEESDQEMSEPSPIEEDYNDTKARRITRKGTKKKTVTFDPSLESVP 277
Query: 324 ELRRERGWRSVSSPA----ASPHRALCDMKVIEP 353
+ R S+PA SP R+ K P
Sbjct: 278 QKRLNASSNVSSNPAKKTRVSPRRSTAASKKKSP 311
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 32.7 bits (71), Expect = 0.12
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 275 ESEEEPVELDNARSCPDPRSEDDDDTKRSKSTNTVSESSDLIPEYSAADELRRE 328
+S E D+A + S+D+DD KR TN V++S L+ +Y A EL E
Sbjct: 54 KSSNPKEEYDSAIDVRNDISQDEDDYKR---TNDVNDSYRLVRQYEAPKELLNE 104
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 32.3 bits (70), Expect = 0.16
Identities = 19/67 (28%), Positives = 30/67 (44%)
Query: 248 EMSSAVGMRNPPEDDRCSLDSVSGCSMESEEEPVELDNARSCPDPRSEDDDDTKRSKSTN 307
E S + + E + S DS S + E+ D++ S + SED D T S ++
Sbjct: 250 EDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSDSESESSSEDSDSTSSSSDSD 309
Query: 308 TVSESSD 314
+ S S D
Sbjct: 310 SSSSSED 316
Score = 28.7 bits (61), Expect = 2.0
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 265 SLDSVSGCSMESEEEPVELDNARSCPDPRSEDDDDTKRSKSTNTVSES 312
S D S ESE + D++ S D SE + S S+++ SES
Sbjct: 108 SSDESDSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSES 155
Score = 28.7 bits (61), Expect = 2.0
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 268 SVSGCSMESEEEPVELDNARSCPDPRSEDDDDTKRSKSTNTVSES 312
S S S ESE + D++ S D SE + S S+++ SES
Sbjct: 165 SSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSES 209
Score = 28.7 bits (61), Expect = 2.0
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 268 SVSGCSMESEEEPVELDNARSCPDPRSEDDDDTKRSKSTNTVSES 312
S S S ESE + D++ S D SE + S S+++ SES
Sbjct: 219 SSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSES 263
Score = 27.5 bits (58), Expect = 4.6
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 268 SVSGCSMESEEEPVELDNARSCPDPRSEDDDDTKRSKSTNTVSES 312
S S ESE + D++ S D SE + S S+++ SES
Sbjct: 129 SSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSES 173
Score = 27.5 bits (58), Expect = 4.6
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 268 SVSGCSMESEEEPVELDNARSCPDPRSEDDDDTKRSKSTNTVSES 312
S S ESE + D++ S D SE + S S+++ SES
Sbjct: 183 SSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSES 227
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 29.9 bits (64), Expect = 0.87
Identities = 42/191 (21%), Positives = 83/191 (43%), Gaps = 10/191 (5%)
Query: 107 LIPKKVHKIEDEKDLSLSSIEDERATFFSPQRNTSKNNLYFTENFVTADSQILNDTL-DL 165
L+ + K+ED K+ LS ++DE F Q + LY T N T +LN L
Sbjct: 328 LVLSEKAKLEDSKNSVLSFLKDENELFMK-QNQLYRTILYETRNKKTLVQNLLNSLEGKL 386
Query: 166 PPDVARIDKHERRKIKPKYGDMKETLNDNSAIHFEKFSSQSTPKCNIKAVDVTPKEEYHS 225
+ + ++ E R I K ++K +L + +A +S+ + + + V +E+
Sbjct: 387 QAHLEKFEQTE-RDISEKNEEVK-SLREKAAKVKNDCTSEKKTRQSYEQQTVKIEEQLKF 444
Query: 226 GVAEWCESPSHLRSIPNFELPIEMSSAVGMRNPPEDDRCSLDS-VSGCSMESEEEPVELD 284
+ + + + + L E S A + + D L+S ++ S+ ++E + LD
Sbjct: 445 LLNKEKKLKKSIEA-----LSFEKSEAENSLSSHDIDSQKLNSEIADLSLRLQQEELSLD 499
Query: 285 NARSCPDPRSE 295
+ R ++E
Sbjct: 500 DIRKSLQGKTE 510
>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 681
Score = 29.1 bits (62), Expect = 1.5
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 13 TPNSALSSDCDEREPDTVLRLQNPQTILRFSDHDKINFNDSL--IHKMSNLHLDSPKINT 70
TP S + ++ ++L+ Q+P L+ SD ++ N N ++ I+K N+H +I+
Sbjct: 312 TPVSRCARPSSRQQTISILQAQSP--FLKKSDKERANLNKTMVSINKSINIHQSIHEISC 369
Query: 71 RPHS 74
HS
Sbjct: 370 PHHS 373
>SPAC23H4.07c |srp102||signal recognition particle receptor beta
subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 29.1 bits (62), Expect = 1.5
Identities = 18/61 (29%), Positives = 26/61 (42%)
Query: 98 SSPDENFPDLIPKKVHKIEDEKDLSLSSIEDERATFFSPQRNTSKNNLYFTENFVTADSQ 157
+ P E L+ ++H I +EK+L L SI E + S +L F V S
Sbjct: 155 AQPAEKIQQLLKAELHNILEEKNLQLESIVSEDVDWESVADQIEDTDLKFLPGSVAKMSN 214
Query: 158 I 158
I
Sbjct: 215 I 215
>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 703
Score = 29.1 bits (62), Expect = 1.5
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 139 NTSKNNLYFTEN--FVTADSQILNDTLDLPPDVARIDK 174
NT+K+N+Y T+N ++ +ILN LD P + D+
Sbjct: 46 NTNKHNVYSTKNSMYLLGFEEILNTVLDCEPHIFTDDE 83
>SPBC365.13c |hba1|caf1|Ran GTPase binding protein
Hba1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 399
Score = 28.7 bits (61), Expect = 2.0
Identities = 18/75 (24%), Positives = 30/75 (40%)
Query: 148 TENFVTADSQILNDTLDLPPDVARIDKHERRKIKPKYGDMKETLNDNSAIHFEKFSSQST 207
TE ++ ++ L + DV + H + K K + + F FS+ S+
Sbjct: 92 TEPCISTGGKVEEKELKVNKDVDENEGHVAVETGKKESAAKPAASVSPFSQFASFSNASS 151
Query: 208 PKCNIKAVDVTPKEE 222
P N+ PKEE
Sbjct: 152 PFSNVSTASSEPKEE 166
>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 574
Score = 28.7 bits (61), Expect = 2.0
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 220 KEEYHSGVAEWCESP-SHLRSIPNFELPIEMSSAVGMRNPPEDDRCSLDSVSGCSMESEE 278
K+++ +GV C P S + PN L + S + + D+ S+ GC E E+
Sbjct: 209 KKQWETGVGHMCFYPLSIINDEPNLALMYRLKSFAKVIDGLMDEAFSIAQAQGCEFEPEK 268
>SPBC21.07c |ppk24||serine/threonine protein kinase
Ppk24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 461
Score = 28.7 bits (61), Expect = 2.0
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 197 IHFEKFSSQSTPKCNIKAVDVTPKEEYHSGVAEWCESPSHLRSIPNFELPIEMSSAVGMR 256
+++ K+ S T C I + D + + + V + + LR IP I +S +
Sbjct: 345 LYYSKYMSILTDTCGISSTD---ESSFQTEVIKQIPTLQPLRYIPEGAKKIILS----LL 397
Query: 257 NPPEDDRCSLDSVSG 271
NP +R SLDS+ G
Sbjct: 398 NPDSQNRPSLDSILG 412
>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 426
Score = 27.9 bits (59), Expect = 3.5
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 393 LFLYVIWTLERLVTEEYVLVYLHGSAGRRRLPGFHWLHECYKLIDRRLRKSLKHLYLVHP 452
L+ + ++ L E ++ LHG R RL ++L + L D S+K L +
Sbjct: 79 LYCFFCLLIDYLGGERAAVISLHGHLPRPRLWPLNYLQDDIDLSDPYTFLSIKRGILQYT 138
Query: 453 TFWLKSFVIL 462
WLK F+++
Sbjct: 139 --WLKPFLVI 146
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 27.9 bits (59), Expect = 3.5
Identities = 19/92 (20%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Query: 108 IPKKVHKIEDEKDLSLSSIEDERATFFSPQRNTSKNNLYFTENFVTADSQIL-NDTLDLP 166
+ KK + D++D ++ + + + +RN S++ + + V D +++ +D +
Sbjct: 34 LKKKRIVLSDDEDGTIENSKVPASKSKVQKRNESEDISHSLPSIVHEDDKLVGSDGVSTT 93
Query: 167 PDVARIDKHERRKIKPKYGDMKETLNDNSAIH 198
PD + R + KP+ KET +H
Sbjct: 94 PDEYFEQQSTRSRSKPRIISNKETTTSKDVVH 125
>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 27.9 bits (59), Expect = 3.5
Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 1/118 (0%)
Query: 211 NIKAVDVTPKEEYHSGVAEWCESPSHLRSIPNFELPIEMSSAVGMRNPPEDDRCSLDSVS 270
N+K P EE+ + + L S F++ + + +GM P D + +
Sbjct: 184 NMKDYSEIPVEEFGAAMLRGMGWNGQLSSKDAFDVN-QRPTFLGMGAKPVDSELTELDIW 242
Query: 271 GCSMESEEEPVELDNARSCPDPRSEDDDDTKRSKSTNTVSESSDLIPEYSAADELRRE 328
++ PV+ + S + ++E + K+S S + ++ SS+L + S + L RE
Sbjct: 243 KNPKKTMFLPVKPLESNSALNSQNEHTEVQKKSNSIDNLTPSSELFRKRSRDNNLSRE 300
>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 900
Score = 27.5 bits (58), Expect = 4.6
Identities = 12/46 (26%), Positives = 28/46 (60%)
Query: 115 IEDEKDLSLSSIEDERATFFSPQRNTSKNNLYFTENFVTADSQILN 160
+++ +D S++ + ++R F P+ + K+ LYF+ F + +IL+
Sbjct: 197 LKNIQDDSMTIVTNKRILRFEPKTSRGKDQLYFSPAFQGSMKEILS 242
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 27.5 bits (58), Expect = 4.6
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Query: 447 LYLVHPTFWLKSFVILTKPFVSSKFFKKLSYVRNLQELMQRVPVEPNAIPETVK 500
L+L HP+ W +L F+SS FF+ + +L++ +Q + + P+TV+
Sbjct: 853 LFLKHPSEW----GVLQHTFISSNFFENVPCYISLEQSLQN--FQNDIRPDTVR 900
>SPAC4F10.09c |||ribosome biogenesis protein Noc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 27.5 bits (58), Expect = 4.6
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 8/78 (10%)
Query: 248 EMSSAVGMRNPPEDDRCSLDSVSGCSMESEEEPVELDNARSCPDPRSEDD-DDTKRSKST 306
EM A M + D S D SM SEE+P+ D SED+ DDT
Sbjct: 750 EMDKA--MTDMGSDSEQSADENDNESMASEEKPMFSDEENLSEIAHSEDEFDDT-----V 802
Query: 307 NTVSESSDLIPEYSAADE 324
+ + +DL+P DE
Sbjct: 803 DFFEDENDLLPFNETDDE 820
>SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 27.5 bits (58), Expect = 4.6
Identities = 40/175 (22%), Positives = 65/175 (37%), Gaps = 10/175 (5%)
Query: 135 SPQRNTSKNNLYFTENFVTADSQILNDTLDLPPDVARIDKHERRKIKPKYGDMKETLNDN 194
S NTS NN + + I D D+ D D + KP + KET
Sbjct: 40 SNDENTSNNNATDLGDLAPPEDDI--DWGDMENDTISTDVN-----KPAEPESKETSAPA 92
Query: 195 SAIHFEKFSSQSTPKCNIKAVDV-TPKEEYHSGVAEWCESPSHLRSIPNFELPIEMSSAV 253
+A+ EK + K +A + T EE+ E +S S+ S P+ E
Sbjct: 93 AAVEIEKENESIISKETSQAPETSTGAEEHQETTEESKQSVSNEVSSPDVAKEQEKLIQR 152
Query: 254 GMR-NPPEDDRCSLDSVSGCSMESEEEPVELDNARSCPDPRSEDDDDTKRSKSTN 307
R P DD + + + ++P+ N ++ ++ + RSK N
Sbjct: 153 AKRFGIPVDDE-QIKKAARAARFGIQQPLASSNNKNHNQSKNPQNRSNSRSKQRN 206
>SPBC685.09 |orc2|orp2|origin recognition complex subunit
Orc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 27.5 bits (58), Expect = 4.6
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 198 HFEKFSSQSTPKCNIKAVDVTPKEEYHSGVAEWC-ESPSHLRSIPNFE 244
+F+KFS + T + + V + Y V E C E+ H +++ +F+
Sbjct: 196 YFDKFSQRKTSSNTLSQLPVLDNQVYLDTVKEICTETEQHTQTLVHFQ 243
>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 27.1 bits (57), Expect = 6.1
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 276 SEEEPVELDNARSCPDPRSEDDDDTKRSKSTN 307
S+E P+E D++ S P + D++ K+ KST+
Sbjct: 239 SDERPIETDSSVSAPKV-ANHDEELKQGKSTS 269
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 27.1 bits (57), Expect = 6.1
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 210 CNIKAVDVTPKEEYHSGVAEWCESPSH 236
C++ ++ V+P+ + + + CE P H
Sbjct: 118 CSVNSMSVSPQSNFMYAICDHCEQPIH 144
>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 632
Score = 26.6 bits (56), Expect = 8.1
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 300 TKRSKSTNTVSESSDLIPEYSAADELRRERGWRSVSS 336
T SKS +V S DL P++S ++ ERG SS
Sbjct: 340 TTLSKSDTSVPTSDDL-PDFSGIEDFMLERGGAHASS 375
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 26.6 bits (56), Expect = 8.1
Identities = 18/53 (33%), Positives = 25/53 (47%)
Query: 288 SCPDPRSEDDDDTKRSKSTNTVSESSDLIPEYSAADELRRERGWRSVSSPAAS 340
S P P S + TKRS VS SD + D+ +++ S SS +AS
Sbjct: 672 SSPSPPSSESKKTKRSWGRLFVSGDSDKEHKEHKKDKQKKKNDQISSSSKSAS 724
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.132 0.394
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,554,340
Number of Sequences: 5004
Number of extensions: 117714
Number of successful extensions: 439
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 416
Number of HSP's gapped (non-prelim): 37
length of query: 507
length of database: 2,362,478
effective HSP length: 76
effective length of query: 431
effective length of database: 1,982,174
effective search space: 854316994
effective search space used: 854316994
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)
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