BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001350-TA|BGIBMGA001350-PA|IPR001251|Cellular retinaldehyde-binding/triple function, C-terminal (507 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_34326| Best HMM Match : CRAL_TRIO (HMM E-Value=0.1) 69 9e-12 SB_8978| Best HMM Match : No HMM Matches (HMM E-Value=.) 69 9e-12 SB_51170| Best HMM Match : GPP34 (HMM E-Value=1.1) 53 5e-07 SB_43333| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 5e-05 SB_49107| Best HMM Match : Enterotoxin_HS (HMM E-Value=3.7) 38 0.025 SB_35257| Best HMM Match : Sec8_exocyst (HMM E-Value=0.59) 35 0.18 SB_34344| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.23 SB_41994| Best HMM Match : F-box (HMM E-Value=1.4e-06) 33 0.54 SB_1228| Best HMM Match : PKD_channel (HMM E-Value=0) 33 0.72 SB_32475| Best HMM Match : IWS1_C (HMM E-Value=0) 32 0.95 SB_43298| Best HMM Match : WD40 (HMM E-Value=1.7e-30) 31 1.7 SB_55214| Best HMM Match : DUF1665 (HMM E-Value=3) 31 2.9 SB_15534| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.9 SB_8607| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.9 SB_35403| Best HMM Match : Lectin_C (HMM E-Value=1e-05) 30 3.8 SB_26218| Best HMM Match : Disintegrin (HMM E-Value=0.85) 30 5.1 SB_43809| Best HMM Match : PSGP (HMM E-Value=0.069) 30 5.1 SB_17758| Best HMM Match : Transformer (HMM E-Value=0.35) 29 6.7 SB_45736| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.7 SB_9866| Best HMM Match : TP2 (HMM E-Value=0.27) 29 6.7 SB_16515| Best HMM Match : Extensin_2 (HMM E-Value=0.12) 29 8.8 SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061) 29 8.8 >SB_34326| Best HMM Match : CRAL_TRIO (HMM E-Value=0.1) Length = 429 Score = 68.9 bits (161), Expect = 9e-12 Identities = 33/108 (30%), Positives = 55/108 (50%) Query: 396 YVIWTLERLVTEEYVLVYLHGSAGRRRLPGFHWLHECYKLIDRRLRKSLKHLYLVHPTFW 455 Y I L+R+V +YV+VY H + P +L E Y ++D + R++LK Y+VHPT W Sbjct: 294 YFISVLDRIVNRDYVVVYFHTHSTEENQPPMSFLKELYHIVDNKYRRNLKAFYIVHPTVW 353 Query: 456 LKSFVILTKPFVSSKFFKKLSYVRNLQELMQRVPVEPNAIPETVKLYE 503 + F +S +K+ ++ +Q L + + IP V Y+ Sbjct: 354 ARIVTWFFTTFTASSVKEKVHFLSGVQYLYDWINPDQLDIPAYVLEYD 401 >SB_8978| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 217 Score = 68.9 bits (161), Expect = 9e-12 Identities = 33/108 (30%), Positives = 55/108 (50%) Query: 396 YVIWTLERLVTEEYVLVYLHGSAGRRRLPGFHWLHECYKLIDRRLRKSLKHLYLVHPTFW 455 Y I L+R+V +YV+VY H + P +L E Y ++D + R++LK Y+VHPT W Sbjct: 4 YFISVLDRIVNRDYVVVYFHTHSTEENQPPMSFLKELYHIVDNKYRRNLKAFYIVHPTVW 63 Query: 456 LKSFVILTKPFVSSKFFKKLSYVRNLQELMQRVPVEPNAIPETVKLYE 503 + F +S +K+ ++ +Q L + + IP V Y+ Sbjct: 64 ARIVTWFFTTFTASSVKEKVHFLSGVQYLYDWINPDQLDIPAYVLEYD 111 >SB_51170| Best HMM Match : GPP34 (HMM E-Value=1.1) Length = 774 Score = 53.2 bits (122), Expect = 5e-07 Identities = 26/101 (25%), Positives = 57/101 (56%), Gaps = 2/101 (1%) Query: 296 DDDDTKRSKSTNTVSESSDLIPEYSAADELRRERGWRSVSSPAASPHRALCDMKVIEPYK 355 D + + S++ E ++ E++ ++R+ +R + + L D+K++EPY Sbjct: 581 DYQEAEPGDSSDEHEEYTEDKEEHNPQGLVQRDEHYRWHTVRVNKREKVL-DLKLLEPYM 639 Query: 356 RVLSHGGYDA-HGAALIVFSACHLPDNSRPDYTYVMDNLFL 395 +V++HGG+ A ++V +AC+LP + +Y ++M+ +FL Sbjct: 640 KVITHGGFHCPERAVIVVIAACYLPSKAEKNYDFLMEQVFL 680 Score = 33.5 bits (73), Expect = 0.41 Identities = 12/28 (42%), Positives = 20/28 (71%) Query: 440 LRKSLKHLYLVHPTFWLKSFVILTKPFV 467 L+K++ ++++VHP WLK+ V K FV Sbjct: 681 LKKNMINMFIVHPNLWLKTVVRFAKAFV 708 >SB_43333| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 453 Score = 46.4 bits (105), Expect = 5e-05 Identities = 19/55 (34%), Positives = 31/55 (56%) Query: 385 DYTYVMDNLFLYVIWTLERLVTEEYVLVYLHGSAGRRRLPGFHWLHECYKLIDRR 439 D+ ++ LY+ TL++ V +Y +VY H + P F WLH+ YK +DR+ Sbjct: 170 DHKQLVGASALYMKHTLDQYVESDYTIVYFHYGLTSKNKPNFSWLHQIYKELDRK 224 >SB_49107| Best HMM Match : Enterotoxin_HS (HMM E-Value=3.7) Length = 254 Score = 37.5 bits (83), Expect = 0.025 Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 2/104 (1%) Query: 270 SGCSMESEEEPVELDNARSCPDPRSEDDDDTKRSKSTNTVSESSDLIPEYSAADELRRER 329 S C EE E+ S + E +D+ +S + SD E ++ER Sbjct: 132 SACKATKEESTDEISETNSNHESDFEVEDNDNGDESFGDADDDSDFDAEVERKSRKKKER 191 Query: 330 GWRSVSSPAASP--HRALCDMKVIEPYKRVLSHGGYDAHGAALI 371 ++V+SPA P RA + I+ K++ G + G + + Sbjct: 192 KTKTVASPAKPPIKPRASVTVTPIKMLKKLQKKSGKNTSGTSSV 235 >SB_35257| Best HMM Match : Sec8_exocyst (HMM E-Value=0.59) Length = 1060 Score = 34.7 bits (76), Expect = 0.18 Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 5/75 (6%) Query: 271 GCSMESEEEPVELDNARSCPDPRSEDDDDTKRSKSTNTVSESSDLIPEYSAADELRRERG 330 G + ++EP E S P SE +D+ +R + T + D++ ++ DE+++ G Sbjct: 554 GQNQSQDQEPHENGPIES---PTSEGNDEPRRIQVT--IKPVDDIMSSTASVDEIKKITG 608 Query: 331 WRSVSSPAASPHRAL 345 S+SSPA+ H +L Sbjct: 609 SLSLSSPASMVHISL 623 >SB_34344| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 845 Score = 34.3 bits (75), Expect = 0.23 Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 4/128 (3%) Query: 201 KFSSQSTPKCNIKAVDVTPKEEYHSGVAEWCESPSHLRSIPNFELPIEMSSAVGMRNPPE 260 K S + N+ ++ K+E S ES R N + IE+S V R Sbjct: 470 KISQMLREQRNVDKPELDAKKEDTSLTENETESKPAFRINDNLQFVIEISENVDNRTVQR 529 Query: 261 DDRCSLDSVSGCSMESEEEPVELDNARSCPDPRSEDDDDTKRSKSTNTVSESSDLIPEYS 320 +++C LD+ ++ ++ E + LD+ + ++DDD + K T SS P S Sbjct: 530 EEKCLLDT---GTIRTDPESI-LDHLKETIIDDNDDDDYDEPLKDTEQDIFSSGSSPVKS 585 Query: 321 AADELRRE 328 +E E Sbjct: 586 GLEESDEE 593 >SB_41994| Best HMM Match : F-box (HMM E-Value=1.4e-06) Length = 1020 Score = 33.1 bits (72), Expect = 0.54 Identities = 38/145 (26%), Positives = 57/145 (39%), Gaps = 10/145 (6%) Query: 167 PDVARIDKHERRKIKPKYGDMKETLNDNSAIHFEKFSSQSTPKCNIKAVDVTPKEEYHSG 226 P + R D+ R K+ ++ N + EK PK N K ++ KE Y S Sbjct: 348 PKLDRQDQLNRLKLLNPARMPHDSEQKNLKLVDEKTHKAGQPKENYKYDNIKLKETYDSK 407 Query: 227 --VAEWCES--PSHLRSIPNFELPIEMSSAVGMRNPPEDDRCSLDSVSGCSME--SEEEP 280 V E E P + + PI+ AV R E+D +++ S SEE Sbjct: 408 PKVVETLEEAGPKRTKGGEQYRRPIQRPGAVVKRKASEEDNENIEPNESDSQRKTSEEHA 467 Query: 281 VELDNARSCPDPRSEDDDDTKRSKS 305 E DN + E+D D S++ Sbjct: 468 QEEDN----DNEEGEEDPDENLSQT 488 >SB_1228| Best HMM Match : PKD_channel (HMM E-Value=0) Length = 1157 Score = 32.7 bits (71), Expect = 0.72 Identities = 23/72 (31%), Positives = 30/72 (41%) Query: 432 CYKLIDRRLRKSLKHLYLVHPTFWLKSFVILTKPFVSSKFFKKLSYVRNLQELMQRVPVE 491 CY +I+ SLK Y V WL +LT FF K YV + +QR P E Sbjct: 750 CYLIIEVGKVLSLKCKYFVSFWNWLNMLQLLTAIATVVLFFFKEDYVSQFVKNVQRNPYE 809 Query: 492 PNAIPETVKLYE 503 +I + E Sbjct: 810 TTSIDYVILFSE 821 >SB_32475| Best HMM Match : IWS1_C (HMM E-Value=0) Length = 768 Score = 32.3 bits (70), Expect = 0.95 Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 13/121 (10%) Query: 200 EKFSSQSTPKCNIKAVD---VTPKEEYHSGVAEWCESPSHLRSIPNFELPIEMSSAVGMR 256 E +S+++P+ + +V+ V+PK E G S +++P E +M A Sbjct: 60 EDEASETSPRGSENSVESRSVSPKNEEEDGARAEHRSTGE-KTLPTAENKQDMEDA---- 114 Query: 257 NPPEDDRCSLDSVSGCSMESEEEPVELDNARSCPDPRSED---DDDTKRSKSTNTVSESS 313 +D++ + CS E E+EP E+ N D ED D+D +N +S Sbjct: 115 --SDDNKSENVASPECSNEEEKEPEEIKNKSEMGDSDKEDKKNDEDDVFGDESNEGIKSG 172 Query: 314 D 314 D Sbjct: 173 D 173 >SB_43298| Best HMM Match : WD40 (HMM E-Value=1.7e-30) Length = 685 Score = 31.5 bits (68), Expect = 1.7 Identities = 17/73 (23%), Positives = 29/73 (39%) Query: 294 SEDDDDTKRSKSTNTVSESSDLIPEYSAADELRRERGWRSVSSPAASPHRALCDMKVIEP 353 ++DDDD S NT S + +A +R G + + +C + Sbjct: 536 NDDDDDINNSNDNNTSSSGIEATGGGTADRHIRFWNGSTGATLNSVDTKSQVCSILWSNE 595 Query: 354 YKRVLSHGGYDAH 366 YK ++S G+ H Sbjct: 596 YKEIISGHGFSQH 608 >SB_55214| Best HMM Match : DUF1665 (HMM E-Value=3) Length = 452 Score = 30.7 bits (66), Expect = 2.9 Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 11/111 (9%) Query: 235 SHLRSIPNF---ELPIEMSSAVGMRNPPEDDRCSLDSVSGCSMESEEE-PVELDNARSCP 290 SH R++P+ E ++ SS + ED RC LD ++G + E + V++++ RS Sbjct: 42 SHYRTLPSESQRERALD-SSESALTAGSEDSRCRLDRLTGMEVNPEVKLLVDMESLRSV- 99 Query: 291 DPRSEDDDDTKRSKSTNTVSESSDLIPEYSAADELRRERGWRSVSSPAASP 341 D RS+ +S +++T S +S+ + ++ R E VS PA P Sbjct: 100 DRRSQ---PVLQSNASSTSSINSNALTR--GTEDRRPEEPSGYVSFPAYRP 145 >SB_15534| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1041 Score = 30.7 bits (66), Expect = 2.9 Identities = 30/151 (19%), Positives = 60/151 (39%), Gaps = 4/151 (2%) Query: 161 DTLDLPPDVARIDKHERRKIKPKYGDMKETLNDNSAIHFEKFSSQSTPKCNIKAVDVTPK 220 + L+L +DK + + ++G+M L ++ K + ++ +T + Sbjct: 215 EDLELVKYNLNLDKAPKAQSHSQHGNMHTPLTKGKLVNSYKDRFEGLGAFKMRPYHITLE 274 Query: 221 EEYHSGVAEWCESPSHLRSIPNFELPIEMSSAVGMRNPPEDDRCSLDSVSGCSMESEEEP 280 E + P HLR + ++ I+ G+ P + ++S+ E+ + Sbjct: 275 EGAEPVIHPPRSVPVHLREL--YKQEIDTMLEAGIIEPVDTPTDWVNSI--VLTETTNDK 330 Query: 281 VELDNARSCPDPRSEDDDDTKRSKSTNTVSE 311 E+ N R C DPR + + T TV E Sbjct: 331 GEITNIRVCLDPRDLNKWIKREPHYTKTVDE 361 >SB_8607| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 564 Score = 30.7 bits (66), Expect = 2.9 Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 5/98 (5%) Query: 254 GMRNPPEDDRCSLDSVSG-CSMESEEEPVELDNARSCPDPRSEDDDDTKRSKSTNTVSES 312 G+ P DDR S+D SG E+ EP + + P + T RS S S Sbjct: 264 GIHLAPTDDRASIDQGSGHRKREAWAEPGPIYPRAAIPPYGVSESLPTSRSAS----SIG 319 Query: 313 SDLIPEYSAADELRRERGWRSVSSPAASPHRALCDMKV 350 SD + + + D+L ER + P L D+ + Sbjct: 320 SDSMSDVTLTDDLMNERPRSTPDDKMRKPTTGLGDVAI 357 >SB_35403| Best HMM Match : Lectin_C (HMM E-Value=1e-05) Length = 2293 Score = 30.3 bits (65), Expect = 3.8 Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 6/129 (4%) Query: 100 PDENFPDLIPKKVHK---IEDEKDLSLSSIED--ERATFFSPQRNTSKNNLYFTENFVTA 154 PD N D + + +K +D K+ SL S +D ER +S ++ + Sbjct: 350 PDANKNDSLKSRDNKKGRTDDSKNDSLRSRDDKKERPVVNRDDSQSSIDDKEKRPDVNKD 409 Query: 155 DSQILNDTLDLPPDVARIDKHERRKIKPKYGDMKETLNDNSAIHFEKFSSQSTPKCNIKA 214 +SQ D + PD+ + D R K K D+ + + +S EK + K N K Sbjct: 410 ESQRSRDDKEKRPDINKDDSQRSRDDKEKRPDVNKDDSQSSIDDKEKRPDVNKQK-NEKY 468 Query: 215 VDVTPKEEY 223 ++V K+ Y Sbjct: 469 MNVASKDHY 477 >SB_26218| Best HMM Match : Disintegrin (HMM E-Value=0.85) Length = 604 Score = 29.9 bits (64), Expect = 5.1 Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 1/85 (1%) Query: 264 CSLDSVSGCSMESEEEPVELDNARSCPDPRSEDDDDTKRSKSTNTVSESSDLIPEYSAAD 323 C L S C + + +L +C +S D TK S T S + DL YS D Sbjct: 114 CDLTKSSTCDL-TRNSTCDLTKGSTCDLTKSSTCDLTKSSTCDLTKSSTCDLTRNYSTCD 172 Query: 324 ELRRERGWRSVSSPAASPHRALCDM 348 + + SS + CD+ Sbjct: 173 LTKSSTCDLTKSSTCDLTKSSTCDL 197 >SB_43809| Best HMM Match : PSGP (HMM E-Value=0.069) Length = 932 Score = 29.9 bits (64), Expect = 5.1 Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 4/102 (3%) Query: 242 NFELPIEMSSAVGM-RNPPEDDRCSLDSVSGCSM-ESEEEPVELDNARSCPDPRSEDDDD 299 N + P SSA + RN D + S ++S ++ S + PV A + PRS D Sbjct: 752 NTQAPKTASSANTIPRNT--DPQASKTAISTATIPRSADAPVSKQVASTATIPRSSDAQV 809 Query: 300 TKRSKSTNTVSESSDLIPEYSAADELRRERGWRSVSSPAASP 341 K+ ST T+ S+D +A+ +R +S +P Sbjct: 810 PKQDASTATIPRSTDTQVSTTASSTATIQRDTEIQASKPVTP 851 >SB_17758| Best HMM Match : Transformer (HMM E-Value=0.35) Length = 974 Score = 29.5 bits (63), Expect = 6.7 Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 5/117 (4%) Query: 167 PDVARIDKHERRKIKPKYGDMKETLNDNSAIHFEKFSSQSTPKCNIKAVDVTPKEEYHSG 226 P+ + +++K K K E+LN+ E + + P+ N+ + DV+ +E S Sbjct: 67 PEAEAKEVKQKKKKKKKNKKGPESLNECRKEESELLKAVAPPEKNVASTDVSKVQEEESE 126 Query: 227 VAEWCESPSHLRSIPNF-ELPIEMSSAVGMRNPPEDDRCSL-DSVSGCSMESEEEPV 281 + E SHL + EL +E +R D C + ++S ++SE +PV Sbjct: 127 M-ESTVKDSHLYQRTSIDELFMEYRDPRLLRR--TDKACEIGTAMSSIRVQSERKPV 180 >SB_45736| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 353 Score = 29.5 bits (63), Expect = 6.7 Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 5/117 (4%) Query: 167 PDVARIDKHERRKIKPKYGDMKETLNDNSAIHFEKFSSQSTPKCNIKAVDVTPKEEYHSG 226 P+ + +++K K K E+LN+ E + + P+ N+ + DV+ +E S Sbjct: 212 PEAEAKEVKQKKKKKKKNKKGPESLNECRKEESELLKAVAPPEKNVASTDVSKVQEEESE 271 Query: 227 VAEWCESPSHLRSIPNF-ELPIEMSSAVGMRNPPEDDRCSL-DSVSGCSMESEEEPV 281 + E SHL + EL +E +R D C + ++S ++SE +PV Sbjct: 272 M-ESTVKDSHLYQRTSIDELFMEYRDPRLLRR--TDKACEIGTAMSSIRVQSERKPV 325 >SB_9866| Best HMM Match : TP2 (HMM E-Value=0.27) Length = 1019 Score = 29.5 bits (63), Expect = 6.7 Identities = 37/165 (22%), Positives = 62/165 (37%), Gaps = 12/165 (7%) Query: 177 RRKIKPKYGDMKETLNDNSAIHFEKFSSQSTPKCNIKAVDVTPKEEYHSGVAEWCESPSH 236 R + + Y D + T N+ H E + P + P+ Y + P+ Sbjct: 750 RSESRIPYADSRITHNETRNAHTESHN----PNIESRLPQNDPRNRYSESRNDSRYIPTE 805 Query: 237 LRSIPNFELPIEMSSAVGMRNPPEDDRCSLDSVSGCSMESEEEPVELDNARSCP-DPRSE 295 RS PN E +S + +++ ++ S +G S+E + PV N ++ S Sbjct: 806 SRSHPN-ESRGHLSESGSVQSKDKEKEVS----TGASVEDAKRPVVRTNPKTLERRVESS 860 Query: 296 DDDDTK--RSKSTNTVSESSDLIPEYSAADELRRERGWRSVSSPA 338 DDD+ K K+ E + L R R VS P+ Sbjct: 861 DDDELKVIEEKTDEKSGNRQSRTEENRPSSPLYPNRQQRIVSPPS 905 >SB_16515| Best HMM Match : Extensin_2 (HMM E-Value=0.12) Length = 917 Score = 29.1 bits (62), Expect = 8.8 Identities = 35/146 (23%), Positives = 58/146 (39%), Gaps = 15/146 (10%) Query: 173 DKHERRKIKPKYGDMKETLNDNSAIHFEKFSSQSTPKCNIKAVDVTPKEEYHSGVAEWCE 232 D+ E + +Y + ++ +D HF S+ P + +D +EY S + + + Sbjct: 465 DRREDEPRRSRYRNFRDDYDDGRPRHF----SRRYPDIREEEMDEQEPQEYRS--SSYVD 518 Query: 233 SPSHLRSIPNFELPIEMSSAVGMRNPPEDDRCSLDSVSGCSMESEEEPVELDNA--RSCP 290 + RS P P+ G ED+R E P +NA RS P Sbjct: 519 ENADTRSNP----PMYRGPPEGPLPYAEDERPRGTPPEYRFPSEEPSPYAEENAISRSNP 574 Query: 291 D---PRSEDDDDTKRSKSTNTVSESS 313 P+ EDDDD +S S+++ Sbjct: 575 PVYTPKEEDDDDDDDEESETEDSQTT 600 >SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061) Length = 2735 Score = 29.1 bits (62), Expect = 8.8 Identities = 14/51 (27%), Positives = 25/51 (49%) Query: 263 RCSLDSVSGCSMESEEEPVELDNARSCPDPRSEDDDDTKRSKSTNTVSESS 313 + ++ SG ++ E + + D+ D EDDDD KRS S+++ Sbjct: 990 KSKVEGSSGKVLKKESKKIPEDDDYDNDDDEDEDDDDLKRSDKPEKKSKAA 1040 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.316 0.132 0.394 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,190,529 Number of Sequences: 59808 Number of extensions: 816434 Number of successful extensions: 4581 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 14 Number of HSP's that attempted gapping in prelim test: 4558 Number of HSP's gapped (non-prelim): 34 length of query: 507 length of database: 16,821,457 effective HSP length: 85 effective length of query: 422 effective length of database: 11,737,777 effective search space: 4953341894 effective search space used: 4953341894 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.6 bits) S2: 62 (29.1 bits)
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