Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001350-TA|BGIBMGA001350-PA|IPR001251|Cellular
retinaldehyde-binding/triple function, C-terminal
(507 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z66521-15|CAA91403.1| 444|Caenorhabditis elegans Hypothetical p... 89 5e-18
AC084152-2|AAM69073.2| 1571|Caenorhabditis elegans Hypothetical ... 33 0.36
Z11126-4|CAA77474.2| 487|Caenorhabditis elegans Hypothetical pr... 33 0.63
Z83107-3|CAB05500.1| 529|Caenorhabditis elegans Hypothetical pr... 32 0.83
U28730-7|AAA68258.2| 665|Caenorhabditis elegans Abnormal cell l... 32 1.1
AF275253-1|AAG28037.1| 665|Caenorhabditis elegans LIN-23 protein. 32 1.1
Z46267-15|CAI79255.1| 1100|Caenorhabditis elegans Hypothetical p... 31 1.5
Z81128-4|CAB03403.1| 898|Caenorhabditis elegans Hypothetical pr... 31 1.9
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 31 1.9
Z81118-10|CAB61029.1| 657|Caenorhabditis elegans Hypothetical p... 30 3.3
Z77668-2|CAB61021.1| 657|Caenorhabditis elegans Hypothetical pr... 30 3.3
Z35595-5|CAA84636.1| 952|Caenorhabditis elegans Hypothetical pr... 30 3.3
AJ000538-1|CAA04171.1| 657|Caenorhabditis elegans GluClalpha2A ... 30 3.3
U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical pr... 30 4.4
AL034543-2|CAA22515.1| 1696|Caenorhabditis elegans Hypothetical ... 30 4.4
Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical pr... 29 5.9
Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical pr... 29 5.9
Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical pr... 29 5.9
Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical pr... 29 5.9
Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical p... 29 5.9
Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical p... 29 5.9
Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical p... 29 5.9
Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical pr... 29 5.9
AL033514-23|CAA22106.3| 1353|Caenorhabditis elegans Hypothetical... 29 5.9
AF183401-1|AAF13189.1| 1353|Caenorhabditis elegans TIM-1 protein. 29 5.9
AF067936-7|AAC19215.1| 316|Caenorhabditis elegans Hypothetical ... 29 5.9
Z73912-1|CAA98145.1| 465|Caenorhabditis elegans Hypothetical pr... 29 7.7
Z14067-1|CAA78450.1| 465|Caenorhabditis elegans putative integr... 29 7.7
Z14066-1|CAA78449.1| 465|Caenorhabditis elegans putative integr... 29 7.7
U23448-2|AAM81127.1| 1124|Caenorhabditis elegans Egg laying defe... 29 7.7
U23448-1|AAM81126.1| 1129|Caenorhabditis elegans Egg laying defe... 29 7.7
AF096618-1|AAD27790.1| 1129|Caenorhabditis elegans EGL-27 protein. 29 7.7
>Z66521-15|CAA91403.1| 444|Caenorhabditis elegans Hypothetical
protein W02B12.8a protein.
Length = 444
Score = 89.4 bits (212), Expect = 5e-18
Identities = 45/137 (32%), Positives = 72/137 (52%), Gaps = 4/137 (2%)
Query: 364 DAHGAALIVFSACHLPDNSRPDYTYVMDNLFLYVIWTLERLVTEEYVLVYLHGSAGRRRL 423
D G ++V A LP + D+ L Y++ ++++V ++Y +VY H
Sbjct: 89 DRVGRPIVVVYAYRLPSSKEIDHA----RLLQYLVQIIDKIVDQDYTIVYFHYGLRSHNK 144
Query: 424 PGFHWLHECYKLIDRRLRKSLKHLYLVHPTFWLKSFVILTKPFVSSKFFKKLSYVRNLQE 483
P WL + YK +DRR +K+LK LY+VHPT +++ L K F+SSKF K YV + E
Sbjct: 145 PPVRWLFQAYKQLDRRFKKNLKALYVVHPTRFIRIIFSLFKGFISSKFENKFHYVMCIDE 204
Query: 484 LMQRVPVEPNAIPETVK 500
L + V +P ++
Sbjct: 205 LENALSVARLNLPSPIR 221
>AC084152-2|AAM69073.2| 1571|Caenorhabditis elegans Hypothetical
protein Y102A11A.3 protein.
Length = 1571
Score = 33.5 bits (73), Expect = 0.36
Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 9/122 (7%)
Query: 204 SQSTPKCNIKAVDVTPKEEYHSGVAEWCESPSHLRSIPNFELPIEMSSA------VGMRN 257
S+ C+++ ++ + +HS V E + +P F+LP S V M +
Sbjct: 289 SEERNVCHLQDQTISEQPHFHSAVLEKSDENISWVQLPTFQLPSLFSKQPILPPNVKMES 348
Query: 258 PPEDDRCSLD-SVSGCSMESEEE-PVELD-NARSCPDPRSEDDDDTKRSKSTNTVSESSD 314
++D + D S+ S P E D N S P+ E D++ + S +T S
Sbjct: 349 EKQEDEANFDYSLQSVPEPSSAYLPHETDQNQSSTSFPQQESDNEDSETSSPDTPENGSV 408
Query: 315 LI 316
L+
Sbjct: 409 LV 410
>Z11126-4|CAA77474.2| 487|Caenorhabditis elegans Hypothetical
protein ZK643.5 protein.
Length = 487
Score = 32.7 bits (71), Expect = 0.63
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 259 PEDDRCSLDSVSGCSMESEEEPV--ELDNARSCPDPRSEDDDDTKRSKSTNTVSESSDLI 316
P D LD+V + E+E+E EL++ + D E+DD+ +R +++ SE
Sbjct: 53 PFDQEDILDTVPEQTDENEDEAGDDELESEKEELDYDEEEDDEDRRERTSRYTSEKKGSR 112
Query: 317 PEYSAADELRRERG 330
+ DE ++E G
Sbjct: 113 KDSVEGDENKKENG 126
>Z83107-3|CAB05500.1| 529|Caenorhabditis elegans Hypothetical
protein F32A7.4 protein.
Length = 529
Score = 32.3 bits (70), Expect = 0.83
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 241 PNFELPIEMSSAVGMRNPPEDDRCSLDSVSGCSMESEEEPVELDNARSCPDPRSEDDDDT 300
P +P + +A + P D C L S C+ + +P+ D RS ++ D T
Sbjct: 387 PGHTVPTMLPTATVLAPCPHDLGCPLGVHSSCTFNTRFQPIRADGRRS-----EKESDGT 441
Query: 301 KRSKSTNTVSESS 313
+ SK T + E S
Sbjct: 442 EVSKFTYMILEKS 454
>U28730-7|AAA68258.2| 665|Caenorhabditis elegans Abnormal cell
lineage protein 23 protein.
Length = 665
Score = 31.9 bits (69), Expect = 1.1
Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 16 SALSSDCDEREPDTVLRLQNPQ----TILRFSDHDKINFNDSLIHKMSNLHLDSPKINTR 71
S + DE +P ++ LQ + +L++S+H++++F D ++H++S+ L R
Sbjct: 17 SLTEGEHDEGKPLSIDYLQGHEGLIEEVLKWSEHEQLDFMDKIVHRLSHYQLGKVDNFIR 76
Query: 72 P 72
P
Sbjct: 77 P 77
>AF275253-1|AAG28037.1| 665|Caenorhabditis elegans LIN-23
protein.
Length = 665
Score = 31.9 bits (69), Expect = 1.1
Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 16 SALSSDCDEREPDTVLRLQNPQ----TILRFSDHDKINFNDSLIHKMSNLHLDSPKINTR 71
S + DE +P ++ LQ + +L++S+H++++F D ++H++S+ L R
Sbjct: 17 SLTEGEHDEGKPLSIDYLQGHEGLIEEVLKWSEHEQLDFMDKIVHRLSHYQLGKVDNFIR 76
Query: 72 P 72
P
Sbjct: 77 P 77
>Z46267-15|CAI79255.1| 1100|Caenorhabditis elegans Hypothetical
protein F49E2.5j protein.
Length = 1100
Score = 31.5 bits (68), Expect = 1.5
Identities = 49/249 (19%), Positives = 103/249 (41%), Gaps = 17/249 (6%)
Query: 110 KKVHKIEDEKDLSLSSIEDERATFFSPQRNTSKNNLYFTENFVTADSQILNDTLDLPPDV 169
++V ++++ S + ++ + +R T+ +++ F + FVTA + ++ P V
Sbjct: 539 EEVAPVQEQVKEQKKSKKSKKTSESESKRPTADDSMDFLD-FVTAKPEKPEQVVEEQPVV 597
Query: 170 ARIDKHERRKIKPKYGDMKETLNDNSAIH-FEKFSSQSTPKCNIKAVD-VTPKEEYHSGV 227
+ K E + K + +++ ++ S + T N+ +D VT K E V
Sbjct: 598 QEVPKPEEKASKKNKKNKRKSESEKKVEKPVAPVSKKPTADDNMDFLDFVTAKPEKTESV 657
Query: 228 AEWCESPSHLRSIPNFELPIEMSSAVGMRNPPEDDRCSLDSVSGCSMESEEEPVELDNAR 287
E E+P + + E ++A G + + ++ +S ESE P
Sbjct: 658 EEHIEAPMIVEPV---HAENETAAAAGGKKKNKKNKNKKNS------ESESTPAAEPVKE 708
Query: 288 SCPDPRSEDDDDTKRSKSTNTVSESSDLIPEYSAADELRRERGWRSVSSPAASPHRALCD 347
P+ E + K T T S ++ P + + ++ S S+PAA P + +
Sbjct: 709 VTPEIVEEVFE-----KKTITPSTAAAAAPAPGSKKNKKNKKNSESESAPAAEPVKEVTP 763
Query: 348 MKVIEPYKR 356
V E +++
Sbjct: 764 EIVEEVFEK 772
>Z81128-4|CAB03403.1| 898|Caenorhabditis elegans Hypothetical
protein T23D8.4 protein.
Length = 898
Score = 31.1 bits (67), Expect = 1.9
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 254 GMRNPPEDDRCSLDSVSGCSMESEEEPVELDNARSCPDPRSEDDDDTKRSKSTNTVSESS 313
G P ++D VS ++E+ P + + D S+ DDD + S+ S SS
Sbjct: 173 GYETPEDEDDDDFGEVS--ESKAEKSPGKPSEKAAVSDSDSDSDDDDSSNWSSEPESNSS 230
Query: 314 DLIPEYSAADELRR 327
D + ++LRR
Sbjct: 231 DDEDSVTKMEQLRR 244
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 31.1 bits (67), Expect = 1.9
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 8/58 (13%)
Query: 291 DPRSEDDDDTKRSKSTN--------TVSESSDLIPEYSAADELRRERGWRSVSSPAAS 340
D +SEDD+D +RS S++ + SESS E S + R+++G RS SS ++S
Sbjct: 108 DLKSEDDEDDRRSSSSSFSKVSHGRSESESSSSGSESSDDENDRKKKGERSGSSSSSS 165
>Z81118-10|CAB61029.1| 657|Caenorhabditis elegans Hypothetical
protein R11G10.1a protein.
Length = 657
Score = 30.3 bits (65), Expect = 3.3
Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 6/104 (5%)
Query: 244 ELPIEMSSAVGMRNPPEDDRCSLDSVSGCSMESEEEPVELDNARSCPDPRSEDDDDTKRS 303
E P+E V +N PE++ + G E+EE E +N S + E + + +
Sbjct: 115 ETPVEKHKEVHFKNEPEEEEIGKEDDGG--GEAEEGEYEEENG-SDAEEEEESPEKVEPA 171
Query: 304 KSTNTVSESSDLIPE---YSAADELRRERGWRSVSSPAASPHRA 344
ST T + PE +D + + R S + H A
Sbjct: 172 TSTITTEAQTTTTPEEVTQDVSDNIEDDEDARPKSEEHSPKHAA 215
>Z77668-2|CAB61021.1| 657|Caenorhabditis elegans Hypothetical
protein R11G10.1a protein.
Length = 657
Score = 30.3 bits (65), Expect = 3.3
Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 6/104 (5%)
Query: 244 ELPIEMSSAVGMRNPPEDDRCSLDSVSGCSMESEEEPVELDNARSCPDPRSEDDDDTKRS 303
E P+E V +N PE++ + G E+EE E +N S + E + + +
Sbjct: 115 ETPVEKHKEVHFKNEPEEEEIGKEDDGG--GEAEEGEYEEENG-SDAEEEEESPEKVEPA 171
Query: 304 KSTNTVSESSDLIPE---YSAADELRRERGWRSVSSPAASPHRA 344
ST T + PE +D + + R S + H A
Sbjct: 172 TSTITTEAQTTTTPEEVTQDVSDNIEDDEDARPKSEEHSPKHAA 215
>Z35595-5|CAA84636.1| 952|Caenorhabditis elegans Hypothetical
protein C01G6.5 protein.
Length = 952
Score = 30.3 bits (65), Expect = 3.3
Identities = 27/108 (25%), Positives = 42/108 (38%), Gaps = 6/108 (5%)
Query: 276 SEEEPVELDNARSCPDPRSEDDDDTKRSKSTNTVSESSDLIPEYSAADELRRERGWRSVS 335
+E P+E+D+ R S T+ + T SE S+++ + + E+G
Sbjct: 493 AETAPMEVDDER-----HSASSGSTENNYRRRTDSEESEILDVVGTDEPDKDEKGGTETE 547
Query: 336 SPAASPH-RALCDMKVIEPYKRVLSHGGYDAHGAALIVFSACHLPDNS 382
+P SP I+ R+ S DA V SA P NS
Sbjct: 548 TPTPSPEDHGRQTQNKIDKNVRMSSTPRIDAQSTPSAVVSALPTPMNS 595
>AJ000538-1|CAA04171.1| 657|Caenorhabditis elegans GluClalpha2A
protein protein.
Length = 657
Score = 30.3 bits (65), Expect = 3.3
Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 6/104 (5%)
Query: 244 ELPIEMSSAVGMRNPPEDDRCSLDSVSGCSMESEEEPVELDNARSCPDPRSEDDDDTKRS 303
E P+E V +N PE++ + G E+EE E +N S + E + + +
Sbjct: 115 ETPVEKHKEVHFKNEPEEEEIGKEDDGG--GEAEEGEYEEENG-SDAEEEEESPEKVEPA 171
Query: 304 KSTNTVSESSDLIPE---YSAADELRRERGWRSVSSPAASPHRA 344
ST T + PE +D + + R S + H A
Sbjct: 172 TSTITTEAQTTTTPEEVTQDVSDNIEDDEDARPKSEEHSPKHAA 215
>U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical
protein B0207.5 protein.
Length = 3279
Score = 29.9 bits (64), Expect = 4.4
Identities = 27/110 (24%), Positives = 41/110 (37%), Gaps = 6/110 (5%)
Query: 200 EKFSSQSTPKCNIKAVDVTPKEEYHSGVAEWCESPSHLRSIPNFE-----LPIEMSSAVG 254
EK + TP+C+IK EEY + + + PN + + IE + +
Sbjct: 817 EKKPRRKTPECSIKDTSKLSDEEYKIYKKKCGSTSEDGNAPPNGDRQKPSVTIEKTVIIN 876
Query: 255 MRNPPEDDRC-SLDSVSGCSMESEEEPVELDNARSCPDPRSEDDDDTKRS 303
P D C S++ E EE + R P P +D D S
Sbjct: 877 PTGPKNPDDCGSINPSKLSDSEYEEYKKKCGKERKTPKPDCDDVDTNNLS 926
>AL034543-2|CAA22515.1| 1696|Caenorhabditis elegans Hypothetical
protein Y81G3A.3 protein.
Length = 1696
Score = 29.9 bits (64), Expect = 4.4
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 267 DSVSGCSMESEEEPVELDNARSCPDPRSEDDDDTKRSKSTNT-VSESSDLIPEYSAADE 324
D S ++E E VE + + D ED+DD +R NT S +D + E S ADE
Sbjct: 676 DDSSEIDWDAESEEVEDEES---DDSDEEDEDDGERLVQLNTETSTGADSVFERSTADE 731
>Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical
protein F07A11.6e protein.
Length = 2101
Score = 29.5 bits (63), Expect = 5.9
Identities = 26/111 (23%), Positives = 36/111 (32%), Gaps = 2/111 (1%)
Query: 233 SPSHLRSIPNFELPIEMSSAVGMRNPPEDDRCSLDSVSGCSMESEEEPVELDNARSCP-- 290
SPS R N P++ S+V ED + S EE N S
Sbjct: 153 SPSSSRDRQNLHDPLQTRSSVEHHTNQEDQENNASGSDSSSDSDSEEGSSSSNEDSDEQN 212
Query: 291 DPRSEDDDDTKRSKSTNTVSESSDLIPEYSAADELRRERGWRSVSSPAASP 341
D EDD+D + + E P DE ++ S + P
Sbjct: 213 DVDEEDDEDVVSEEKRHEPEEGKSSSPGNGHRDESNGDKDHEDSSERFSQP 263
>Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical
protein F07A11.6c protein.
Length = 2392
Score = 29.5 bits (63), Expect = 5.9
Identities = 26/111 (23%), Positives = 36/111 (32%), Gaps = 2/111 (1%)
Query: 233 SPSHLRSIPNFELPIEMSSAVGMRNPPEDDRCSLDSVSGCSMESEEEPVELDNARSCP-- 290
SPS R N P++ S+V ED + S EE N S
Sbjct: 444 SPSSSRDRQNLHDPLQTRSSVEHHTNQEDQENNASGSDSSSDSDSEEGSSSSNEDSDEQN 503
Query: 291 DPRSEDDDDTKRSKSTNTVSESSDLIPEYSAADELRRERGWRSVSSPAASP 341
D EDD+D + + E P DE ++ S + P
Sbjct: 504 DVDEEDDEDVVSEEKRHEPEEGKSSSPGNGHRDESNGDKDHEDSSERFSQP 554
>Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical
protein F07A11.6b protein.
Length = 2407
Score = 29.5 bits (63), Expect = 5.9
Identities = 26/111 (23%), Positives = 36/111 (32%), Gaps = 2/111 (1%)
Query: 233 SPSHLRSIPNFELPIEMSSAVGMRNPPEDDRCSLDSVSGCSMESEEEPVELDNARSCP-- 290
SPS R N P++ S+V ED + S EE N S
Sbjct: 459 SPSSSRDRQNLHDPLQTRSSVEHHTNQEDQENNASGSDSSSDSDSEEGSSSSNEDSDEQN 518
Query: 291 DPRSEDDDDTKRSKSTNTVSESSDLIPEYSAADELRRERGWRSVSSPAASP 341
D EDD+D + + E P DE ++ S + P
Sbjct: 519 DVDEEDDEDVVSEEKRHEPEEGKSSSPGNGHRDESNGDKDHEDSSERFSQP 569
>Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical
protein F07A11.6a protein.
Length = 2211
Score = 29.5 bits (63), Expect = 5.9
Identities = 26/111 (23%), Positives = 36/111 (32%), Gaps = 2/111 (1%)
Query: 233 SPSHLRSIPNFELPIEMSSAVGMRNPPEDDRCSLDSVSGCSMESEEEPVELDNARSCP-- 290
SPS R N P++ S+V ED + S EE N S
Sbjct: 459 SPSSSRDRQNLHDPLQTRSSVEHHTNQEDQENNASGSDSSSDSDSEEGSSSSNEDSDEQN 518
Query: 291 DPRSEDDDDTKRSKSTNTVSESSDLIPEYSAADELRRERGWRSVSSPAASP 341
D EDD+D + + E P DE ++ S + P
Sbjct: 519 DVDEEDDEDVVSEEKRHEPEEGKSSSPGNGHRDESNGDKDHEDSSERFSQP 569
>Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical
protein F07A11.6e protein.
Length = 2101
Score = 29.5 bits (63), Expect = 5.9
Identities = 26/111 (23%), Positives = 36/111 (32%), Gaps = 2/111 (1%)
Query: 233 SPSHLRSIPNFELPIEMSSAVGMRNPPEDDRCSLDSVSGCSMESEEEPVELDNARSCP-- 290
SPS R N P++ S+V ED + S EE N S
Sbjct: 153 SPSSSRDRQNLHDPLQTRSSVEHHTNQEDQENNASGSDSSSDSDSEEGSSSSNEDSDEQN 212
Query: 291 DPRSEDDDDTKRSKSTNTVSESSDLIPEYSAADELRRERGWRSVSSPAASP 341
D EDD+D + + E P DE ++ S + P
Sbjct: 213 DVDEEDDEDVVSEEKRHEPEEGKSSSPGNGHRDESNGDKDHEDSSERFSQP 263
>Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical
protein F07A11.6c protein.
Length = 2392
Score = 29.5 bits (63), Expect = 5.9
Identities = 26/111 (23%), Positives = 36/111 (32%), Gaps = 2/111 (1%)
Query: 233 SPSHLRSIPNFELPIEMSSAVGMRNPPEDDRCSLDSVSGCSMESEEEPVELDNARSCP-- 290
SPS R N P++ S+V ED + S EE N S
Sbjct: 444 SPSSSRDRQNLHDPLQTRSSVEHHTNQEDQENNASGSDSSSDSDSEEGSSSSNEDSDEQN 503
Query: 291 DPRSEDDDDTKRSKSTNTVSESSDLIPEYSAADELRRERGWRSVSSPAASP 341
D EDD+D + + E P DE ++ S + P
Sbjct: 504 DVDEEDDEDVVSEEKRHEPEEGKSSSPGNGHRDESNGDKDHEDSSERFSQP 554
>Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical
protein F07A11.6b protein.
Length = 2407
Score = 29.5 bits (63), Expect = 5.9
Identities = 26/111 (23%), Positives = 36/111 (32%), Gaps = 2/111 (1%)
Query: 233 SPSHLRSIPNFELPIEMSSAVGMRNPPEDDRCSLDSVSGCSMESEEEPVELDNARSCP-- 290
SPS R N P++ S+V ED + S EE N S
Sbjct: 459 SPSSSRDRQNLHDPLQTRSSVEHHTNQEDQENNASGSDSSSDSDSEEGSSSSNEDSDEQN 518
Query: 291 DPRSEDDDDTKRSKSTNTVSESSDLIPEYSAADELRRERGWRSVSSPAASP 341
D EDD+D + + E P DE ++ S + P
Sbjct: 519 DVDEEDDEDVVSEEKRHEPEEGKSSSPGNGHRDESNGDKDHEDSSERFSQP 569
>Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical
protein F07A11.6a protein.
Length = 2211
Score = 29.5 bits (63), Expect = 5.9
Identities = 26/111 (23%), Positives = 36/111 (32%), Gaps = 2/111 (1%)
Query: 233 SPSHLRSIPNFELPIEMSSAVGMRNPPEDDRCSLDSVSGCSMESEEEPVELDNARSCP-- 290
SPS R N P++ S+V ED + S EE N S
Sbjct: 459 SPSSSRDRQNLHDPLQTRSSVEHHTNQEDQENNASGSDSSSDSDSEEGSSSSNEDSDEQN 518
Query: 291 DPRSEDDDDTKRSKSTNTVSESSDLIPEYSAADELRRERGWRSVSSPAASP 341
D EDD+D + + E P DE ++ S + P
Sbjct: 519 DVDEEDDEDVVSEEKRHEPEEGKSSSPGNGHRDESNGDKDHEDSSERFSQP 569
>AL033514-23|CAA22106.3| 1353|Caenorhabditis elegans Hypothetical
protein Y75B8A.22 protein.
Length = 1353
Score = 29.5 bits (63), Expect = 5.9
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 260 EDDRCSLDSVSGCSMESEEEPVELDNARSCPDPRSEDD--DDTKRSKSTNTVSESSDLI 316
+DD S + V G S + EEE + + + R PD E++ + + K V+E + +
Sbjct: 1186 DDDDDSENDVGGGSEDDEEEEIVMKSKRIIPDSEDEEEHIEQEEAQKKLEKVAEKPNTL 1244
>AF183401-1|AAF13189.1| 1353|Caenorhabditis elegans TIM-1 protein.
Length = 1353
Score = 29.5 bits (63), Expect = 5.9
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 260 EDDRCSLDSVSGCSMESEEEPVELDNARSCPDPRSEDD--DDTKRSKSTNTVSESSDLI 316
+DD S + V G S + EEE + + + R PD E++ + + K V+E + +
Sbjct: 1186 DDDDDSENDVGGGSEDDEEEEIVMKSKRIIPDSEDEEEHIEQEEAQKKLEKVAEKPNTL 1244
>AF067936-7|AAC19215.1| 316|Caenorhabditis elegans Hypothetical
protein C24G6.8 protein.
Length = 316
Score = 29.5 bits (63), Expect = 5.9
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 253 VGMRNPPEDDRCSLDSVSGCSMESEEEPVELDNARSCPD 291
+G+ NPPE D S+ + G S V +DNA S PD
Sbjct: 24 LGVDNPPEPDNASIRAERGSPTPSS---VTVDNAPSLPD 59
>Z73912-1|CAA98145.1| 465|Caenorhabditis elegans Hypothetical
protein ZK524.1 protein.
Length = 465
Score = 29.1 bits (62), Expect = 7.7
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 274 MESEEEPVELDNARSCPDPRSEDDDDTKRSKSTNTVSESSDLIPEYSAAD 323
+E+E P+EL S + S+D+ DT + S ++ SSD S +D
Sbjct: 300 VEAEPSPIELKEKNS-TEELSDDESDTSETSSGSSNLSSSDSSTTVSTSD 348
>Z14067-1|CAA78450.1| 465|Caenorhabditis elegans putative integral
membrane protein protein.
Length = 465
Score = 29.1 bits (62), Expect = 7.7
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 274 MESEEEPVELDNARSCPDPRSEDDDDTKRSKSTNTVSESSDLIPEYSAAD 323
+E+E P+EL S + S+D+ DT + S ++ SSD S +D
Sbjct: 300 VEAEPSPIELKEKNS-TEELSDDESDTSETSSGSSNLSSSDSSTTVSTSD 348
>Z14066-1|CAA78449.1| 465|Caenorhabditis elegans putative integral
membrane protein protein.
Length = 465
Score = 29.1 bits (62), Expect = 7.7
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 274 MESEEEPVELDNARSCPDPRSEDDDDTKRSKSTNTVSESSDLIPEYSAAD 323
+E+E P+EL S + S+D+ DT + S ++ SSD S +D
Sbjct: 300 VEAEPSPIELKEKNS-TEELSDDESDTSETSSGSSNLSSSDSSTTVSTSD 348
>U23448-2|AAM81127.1| 1124|Caenorhabditis elegans Egg laying
defective protein 27,isoform b protein.
Length = 1124
Score = 29.1 bits (62), Expect = 7.7
Identities = 38/144 (26%), Positives = 54/144 (37%), Gaps = 13/144 (9%)
Query: 171 RIDKHERRKIKPKYGDMKETLNDNSAIHFEKFSSQSTPKCNIKAVDVTPKEEYHSGVAEW 230
R K E+R+ P M ET + S S+ S N+ A + TP ++ + V
Sbjct: 499 RAGKKEQRRRTPS--SMSETPDRRSP------STVSNGAPNLTAEE-TPTKKLNGSVKRA 549
Query: 231 CESPSHLRSIPNFELPIEMSSAVGMRNPPEDDRCSLDSVSGCSMESEEEPVELDNARSCP 290
+ P H I N E PP L +G ES E + R
Sbjct: 550 PKRPLHNGVINNVEKSNSSEEPASPTTPPPTLTNGL--TNGHGPESSTPNGETISKRMKV 607
Query: 291 DPRSEDDDDTKRSKSTNTVSESSD 314
+P +DDDD + K T+ E D
Sbjct: 608 EPSYDDDDDEEEGKM--TIDEGDD 629
>U23448-1|AAM81126.1| 1129|Caenorhabditis elegans Egg laying
defective protein 27,isoform a protein.
Length = 1129
Score = 29.1 bits (62), Expect = 7.7
Identities = 38/144 (26%), Positives = 54/144 (37%), Gaps = 13/144 (9%)
Query: 171 RIDKHERRKIKPKYGDMKETLNDNSAIHFEKFSSQSTPKCNIKAVDVTPKEEYHSGVAEW 230
R K E+R+ P M ET + S S+ S N+ A + TP ++ + V
Sbjct: 502 RAGKKEQRRRTPS--SMSETPDRRSP------STVSNGAPNLTAEE-TPTKKLNGSVKRA 552
Query: 231 CESPSHLRSIPNFELPIEMSSAVGMRNPPEDDRCSLDSVSGCSMESEEEPVELDNARSCP 290
+ P H I N E PP L +G ES E + R
Sbjct: 553 PKRPLHNGVINNVEKSNSSEEPASPTTPPPTLTNGL--TNGHGPESSTPNGETISKRMKV 610
Query: 291 DPRSEDDDDTKRSKSTNTVSESSD 314
+P +DDDD + K T+ E D
Sbjct: 611 EPSYDDDDDEEEGKM--TIDEGDD 632
>AF096618-1|AAD27790.1| 1129|Caenorhabditis elegans EGL-27 protein.
Length = 1129
Score = 29.1 bits (62), Expect = 7.7
Identities = 38/144 (26%), Positives = 54/144 (37%), Gaps = 13/144 (9%)
Query: 171 RIDKHERRKIKPKYGDMKETLNDNSAIHFEKFSSQSTPKCNIKAVDVTPKEEYHSGVAEW 230
R K E+R+ P M ET + S S+ S N+ A + TP ++ + V
Sbjct: 502 RAGKKEQRRRTPS--SMSETPDRRSP------STVSNGAPNLTAEE-TPTKKLNGSVKRA 552
Query: 231 CESPSHLRSIPNFELPIEMSSAVGMRNPPEDDRCSLDSVSGCSMESEEEPVELDNARSCP 290
+ P H I N E PP L +G ES E + R
Sbjct: 553 PKRPLHNGVINNVEKSNSSEEPASPTTPPPTLTNGL--TNGHGPESSTPNGETISKRMKV 610
Query: 291 DPRSEDDDDTKRSKSTNTVSESSD 314
+P +DDDD + K T+ E D
Sbjct: 611 EPSYDDDDDEEEGKM--TIDEGDD 632
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.316 0.132 0.394
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,594,420
Number of Sequences: 27539
Number of extensions: 622067
Number of successful extensions: 2164
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 2145
Number of HSP's gapped (non-prelim): 44
length of query: 507
length of database: 12,573,161
effective HSP length: 84
effective length of query: 423
effective length of database: 10,259,885
effective search space: 4339931355
effective search space used: 4339931355
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 62 (29.1 bits)
- SilkBase 1999-2023 -