Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001349-TA|BGIBMGA001349-PA|IPR006553|Leucine-rich
repeat, cysteine-containing subtype, IPR001611|Leucine-rich repeat
         (219 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|...    46   4e-06
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce...    37   0.003
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb...    29   0.53 
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos...    26   3.8  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    25   6.6  
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    25   8.7  

>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 46.0 bits (104), Expect = 4e-06
 Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 3/108 (2%)

Query: 69  LTDAGFQALARNCRMLERMDLEECVLITDATLVHLSMGCPRLEKLTLSHCDLITDNGIKQ 128
           L D+  + +      L  + L +C+ +TD++L+ L+     L  L L HC  ITD G+ Q
Sbjct: 264 LKDSDIELITCKFSKLNSLFLSKCIGLTDSSLLSLTKLSQSLTTLHLGHCYEITDIGV-Q 322

Query: 129 LSLSPCAAEHLTVLGLDNCPLVTDEALEHLTSCHNLQLIELYDCQMVT 176
             L  C  +++T +    C  ++D A+  +     LQ + L  C  +T
Sbjct: 323 CLLKSC--KNITYIDFGGCLRLSDIAVSAIAKLPYLQRVGLVKCICLT 368



 Score = 45.2 bits (102), Expect = 8e-06
 Identities = 25/82 (30%), Positives = 48/82 (58%), Gaps = 2/82 (2%)

Query: 66  CTQLTDAGFQALARNCRMLERMDLEECVLITDATLVHLSMGCPR-LEKLTLSHCDLITDN 124
           C +L+D    A+A+    L+R+ L +C+ +TD +++ LS    R LE++ LS+C  +T  
Sbjct: 339 CLRLSDIAVSAIAK-LPYLQRVGLVKCICLTDLSVILLSGSFSRNLERVHLSYCIGLTAK 397

Query: 125 GIKQLSLSPCAAEHLTVLGLDN 146
            +  L  +    +HL+V G+++
Sbjct: 398 SVSYLMYNCKTLKHLSVTGINS 419



 Score = 42.3 bits (95), Expect = 5e-05
 Identities = 26/108 (24%), Positives = 53/108 (49%), Gaps = 3/108 (2%)

Query: 66  CTQLTDAGFQALARNCRMLERMDLEECVLITDATLVHLSMGCPRLEKLTLSHCDLITDNG 125
           CT++++     L      L  ++      +    L ++S  CP L+ L + +C L+ D G
Sbjct: 104 CTRISEPLIGKLLYQNLNLVTINFSNIFSLPANILEYISDNCPNLKALNIGNCGLVEDTG 163

Query: 126 IKQLSLSPCAAEHLTVLGLDNCPLVTDEALEHLTSCHNLQLIELYDCQ 173
           + Q+ +  C   +L  L + NC  +TD +L+ L+   +L  +++  C+
Sbjct: 164 MVQI-IKRC--PYLNRLIIPNCRKLTDVSLQILSEKEDLIELDISGCE 208



 Score = 39.5 bits (88), Expect = 4e-04
 Identities = 30/129 (23%), Positives = 57/129 (44%), Gaps = 6/129 (4%)

Query: 65  QCTQLTDAGFQALARNCRMLERMDLEECVLITDATLVHLSMGCPRLEKLTLSHCDLITDN 124
           +C  LTD+   +L +  + L  + L  C  ITD  +  L   C  +  +    C  ++D 
Sbjct: 286 KCIGLTDSSLLSLTKLSQSLTTLHLGHCYEITDIGVQCLLKSCKNITYIDFGGCLRLSDI 345

Query: 125 GIKQLSLSPCAAEHLTVLGLDNCPLVTDEALEHLTS--CHNLQLIELYDCQMVTRNAIRK 182
            +  ++  P    +L  +GL  C  +TD ++  L+     NL+ + L  C  +T  ++  
Sbjct: 346 AVSAIAKLP----YLQRVGLVKCICLTDLSVILLSGSFSRNLERVHLSYCIGLTAKSVSY 401

Query: 183 LRNHLPNIK 191
           L  +   +K
Sbjct: 402 LMYNCKTLK 410


>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 563

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 4/112 (3%)

Query: 84  LERMDLEECVLITDATLVH-LSMGCPRLEKLTLSHCDLITDNGIKQLSLSPCAAEHLTVL 142
           L  + L  C  +TD  L   +   C RL+ L LS  +L+TD+    +         L  L
Sbjct: 401 LHTLSLSGCTKLTDEVLKQGIGPCCGRLKHLNLSGLELLTDDEASIVFGEWKIQSGLETL 460

Query: 143 GLDNCPLVTDEALEH--LTSCHNLQLIELYDCQMVTRNAIRKLRNH-LPNIK 191
            L  C  + D+ +    + S H L+ ++L     VT  A++ + N  LP +K
Sbjct: 461 SLRRCLSLGDKTVRAVLVNSGHTLRTLDLNGMSFVTDEALQYIVNFPLPMLK 512



 Score = 28.7 bits (61), Expect = 0.71
 Identities = 12/37 (32%), Positives = 21/37 (56%)

Query: 87  MDLEECVLITDATLVHLSMGCPRLEKLTLSHCDLITD 123
           + L +C  IT  +L  ++  CP L+ L L++C  + D
Sbjct: 246 LKLYDCSKITADSLFQIAQYCPNLQTLHLTYCGQMQD 282



 Score = 26.2 bits (55), Expect = 3.8
 Identities = 7/25 (28%), Positives = 18/25 (72%)

Query: 167 IELYDCQMVTRNAIRKLRNHLPNIK 191
           ++LYDC  +T +++ ++  + PN++
Sbjct: 246 LKLYDCSKITADSLFQIAQYCPNLQ 270



 Score = 25.0 bits (52), Expect = 8.7
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 140 TVLGLDNCPLVTDEALEHLTS-CHNLQLIELYDCQMVTRNAIRKLRNHLPNI 190
           T L L +C  +T ++L  +   C NLQ + L  C  +    +    +HL  +
Sbjct: 244 TELKLYDCSKITADSLFQIAQYCPNLQTLHLTYCGQMQDQVLHFYADHLTEL 295


>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 827

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 114 TLSHCDLITDNGIKQLSLSPCAAEHLTVLGLDNCPLVTDEALEHLTS-CHNL 164
           TL H  L  DN  +  + S    +H  +L L   P+++ E LEHLT   H+L
Sbjct: 440 TLHHVKLHPDNKSRLENFSVILLQH--ILHLTRQPMISMELLEHLTEHLHSL 489


>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 86  RMDLEECVLITDATLVHLSMGCPRLEKLTLSHCDLITDNGIKQLSL 131
           R ++E C+   + +L+H S  C  L  L L H  L  D  ++  ++
Sbjct: 246 RKEIEYCIKKIEDSLIHASEDCQTLVPLPL-HAGLTVDEQMRVFNI 290


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 16/80 (20%), Positives = 33/80 (41%)

Query: 77  LARNCRMLERMDLEECVLITDATLVHLSMGCPRLEKLTLSHCDLITDNGIKQLSLSPCAA 136
           L+R CR++ R D E C    + T + +S     L +  L   +    + ++Q        
Sbjct: 764 LSRYCRLVRRWDEESCSFDPNETNLFISSAVEVLRETLLDAANRAVASHLRQEFRENAFL 823

Query: 137 EHLTVLGLDNCPLVTDEALE 156
               +   +NC ++   A++
Sbjct: 824 RTQRLPSRENCRILQSMAIQ 843


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 113 LTLSHCDLITDNGIKQLSLSPCAAEHLTVLGL-DNCPLVTDEAL 155
           +TLS  DL  D+    L L P A EH     L  + PLV   +L
Sbjct: 139 VTLSSLDLPKDSNTDPLRLPPIATEHDPFAHLRSSMPLVMANSL 182


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.325    0.136    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 717,828
Number of Sequences: 5004
Number of extensions: 23535
Number of successful extensions: 85
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 70
Number of HSP's gapped (non-prelim): 13
length of query: 219
length of database: 2,362,478
effective HSP length: 70
effective length of query: 149
effective length of database: 2,012,198
effective search space: 299817502
effective search space used: 299817502
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 52 (25.0 bits)