GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001349-TA|BGIBMGA001349-PA|IPR006553|Leucine-rich
repeat, cysteine-containing subtype, IPR001611|Leucine-rich repeat
         (219 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    26   0.20 
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    21   5.8  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    21   5.8  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    21   5.8  

>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 26.2 bits (55), Expect = 0.20
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)

Query: 132 SPCAAEHLTVLGLDNCPLVTDEALEHLTSCHN 163
           S CA+E     GLD  P+V    L+HL SC N
Sbjct: 115 SECASEVGRFPGLD--PVVKRRLLQHLASCLN 144


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 11/51 (21%), Positives = 24/51 (47%)

Query: 145 DNCPLVTDEALEHLTSCHNLQLIELYDCQMVTRNAIRKLRNHLPNIKVHAY 195
           D+C +   +   ++ +C  + L +L       R+ I +  NHL ++ V  +
Sbjct: 150 DSCTVNNYQDASNVRNCELVGLADLNQGSDYVRSKIIEYMNHLVDLGVAGF 200


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 11/51 (21%), Positives = 24/51 (47%)

Query: 145 DNCPLVTDEALEHLTSCHNLQLIELYDCQMVTRNAIRKLRNHLPNIKVHAY 195
           D+C +   +   ++ +C  + L +L       R+ I +  NHL ++ V  +
Sbjct: 151 DSCTVNNYQDASNVRNCELVGLADLNQGSDYVRSKIIEYMNHLVDLGVAGF 201


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 11/51 (21%), Positives = 24/51 (47%)

Query: 145 DNCPLVTDEALEHLTSCHNLQLIELYDCQMVTRNAIRKLRNHLPNIKVHAY 195
           D+C +   +   ++ +C  + L +L       R+ I +  NHL ++ V  +
Sbjct: 151 DSCTVNNYQDASNVRNCELVGLADLNQGSDYVRSKIIEYMNHLVDLGVAGF 201


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.325    0.136    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,218
Number of Sequences: 317
Number of extensions: 1333
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 219
length of database: 114,650
effective HSP length: 54
effective length of query: 165
effective length of database: 97,532
effective search space: 16092780
effective search space used: 16092780
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 42 (21.0 bits)