GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001349-TA|BGIBMGA001349-PA|IPR006553|Leucine-rich
repeat, cysteine-containing subtype, IPR001611|Leucine-rich repeat
         (219 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF437889-1|AAL84184.1|  155|Anopheles gambiae odorant binding pr...    25   1.8  
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    24   3.1  
AY146725-1|AAO12085.1|  155|Anopheles gambiae odorant-binding pr...    24   3.1  
AY146724-1|AAO12084.1|  151|Anopheles gambiae odorant-binding pr...    24   3.1  

>AF437889-1|AAL84184.1|  155|Anopheles gambiae odorant binding
           protein protein.
          Length = 155

 Score = 25.0 bits (52), Expect = 1.8
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 123 DNGIKQLSLSPCAAEHLTVLGLDNCPLVTDEALE 156
           D  +KQ+ + P        LGLD+C    D+A +
Sbjct: 100 DAAVKQIEILPETYRQPFRLGLDSCRTAADDATD 133


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 14/37 (37%), Positives = 18/37 (48%)

Query: 143 GLDNCPLVTDEALEHLTSCHNLQLIELYDCQMVTRNA 179
           G  N  L T  A  HL+ C++L L +L     VT  A
Sbjct: 523 GTGNLLLKTAGATGHLSCCNSLFLNDLQQAAAVTTGA 559


>AY146725-1|AAO12085.1|  155|Anopheles gambiae odorant-binding
           protein AgamOBP6 protein.
          Length = 155

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 123 DNGIKQLSLSPCAAEHLTVLGLDNCPLVTDEALE 156
           D  +KQ+ + P        LGLD+C    D+A +
Sbjct: 100 DAAVKQIDILPENYRQPFRLGLDSCRTAADDATD 133


>AY146724-1|AAO12084.1|  151|Anopheles gambiae odorant-binding
           protein AgamOBP18 protein.
          Length = 151

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 123 DNGIKQLSLSPCAAEHLTVLGLDNCPLVTDEALE 156
           D  +KQ+ + P        LGLD+C    D+A +
Sbjct: 96  DAAVKQIEILPENYRQPFRLGLDSCRTAADDATD 129


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.325    0.136    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,948
Number of Sequences: 2123
Number of extensions: 6215
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 4
length of query: 219
length of database: 516,269
effective HSP length: 62
effective length of query: 157
effective length of database: 384,643
effective search space: 60388951
effective search space used: 60388951
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 46 (22.6 bits)