GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001349-TA|BGIBMGA001349-PA|IPR006553|Leucine-rich
repeat, cysteine-containing subtype, IPR001611|Leucine-rich repeat
         (219 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    25   0.56 
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   1.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   3.9  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   5.2  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 25.0 bits (52), Expect = 0.56
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 118 CDLITDNGIKQLSLSPCAAEHLTVLGLDNC-PLVTDEALE 156
           CDL  DN  K   L  C  E L ++    C   + DE +E
Sbjct: 368 CDLTIDNLRKAKYLRACITESLRLIPTTTCIARILDEPIE 407


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 108 PRLEKLTLSHCDLITDNGIKQLSLSP 133
           PR  KLT++       NGI  ++LSP
Sbjct: 238 PRYTKLTVAGESFTVKNGIYGIALSP 263


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 4   VAKYSTARGGRGCAQTVSDEAVSRLGGALRRLCASG 39
           V K  T    RGC    SD+ V+ +  A++R  A+G
Sbjct: 333 VLKLLTKPRARGCIIFGSDQEVAGVMRAVKRCNATG 368


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 108 PRLEKLTLSHCDLITDNGIKQLSLSP 133
           PR  K+T+        NGI  ++LSP
Sbjct: 233 PRYAKMTIDGESFTLKNGICGMALSP 258


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.325    0.136    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,636
Number of Sequences: 429
Number of extensions: 1390
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 4
length of query: 219
length of database: 140,377
effective HSP length: 55
effective length of query: 164
effective length of database: 116,782
effective search space: 19152248
effective search space used: 19152248
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 42 (21.0 bits)