GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001348-TA|BGIBMGA001348-PA|IPR001810|Cyclin-like F-box,
IPR006553|Leucine-rich repeat, cysteine-containing subtype,
IPR001395|Aldo/keto reductase
         (595 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical prote...    29   0.35 
AJ438610-11|CAD27483.1|  765|Anopheles gambiae hypothetical prot...    29   0.35 
CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           25   5.7  
DQ974166-1|ABJ52806.1|  494|Anopheles gambiae serpin 6 protein.        25   7.5  
AF378002-1|AAL16724.1|  336|Anopheles gambiae putative transposa...    24   9.9  

>AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical protein
           protein.
          Length = 1645

 Score = 29.1 bits (62), Expect = 0.35
 Identities = 14/41 (34%), Positives = 18/41 (43%)

Query: 202 FNKQQLERVLKEGTIKPDAIQIEVHLQNVQKEMVEFCQSEG 242
           FN      V  EGTI PD    + H +  +   V  C +EG
Sbjct: 545 FNTSASSSVTSEGTITPDLQTFDYHDEGGETSSVYSCDTEG 585


>AJ438610-11|CAD27483.1|  765|Anopheles gambiae hypothetical protein
           protein.
          Length = 765

 Score = 29.1 bits (62), Expect = 0.35
 Identities = 14/41 (34%), Positives = 18/41 (43%)

Query: 202 FNKQQLERVLKEGTIKPDAIQIEVHLQNVQKEMVEFCQSEG 242
           FN      V  EGTI PD    + H +  +   V  C +EG
Sbjct: 546 FNTSASSSVTSEGTITPDLQTFDYHDEGGETSSVYSCDTEG 586


>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 199  LSNFNKQQLERVLKEGTIKPDAI 221
            L  F K QL + LK G I+P+ +
Sbjct: 1550 LETFQKAQLRQKLKRGKIEPNGV 1572


>DQ974166-1|ABJ52806.1|  494|Anopheles gambiae serpin 6 protein.
          Length = 494

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 2/50 (4%)

Query: 281 KTTPQIVLRWQIERKVVPIPKTVNPKRLEENINIFDF--TLTPDEVEKIN 328
           +T  ++ LR   E    P P TV P+      N       LTPD   KI+
Sbjct: 40  RTAQRVALRHSFETDGTPAPSTVRPRPPAPPTNAPSQLPALTPDNDAKIS 89


>AF378002-1|AAL16724.1|  336|Anopheles gambiae putative transposase
           protein.
          Length = 336

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 8/21 (38%), Positives = 14/21 (66%)

Query: 285 QIVLRWQIERKVVPIPKTVNP 305
           ++V  W  E+ V+ +PK +NP
Sbjct: 247 KVVREWYAEKGVLFVPKNLNP 267


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.319    0.136    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 590,156
Number of Sequences: 2123
Number of extensions: 24883
Number of successful extensions: 54
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 50
Number of HSP's gapped (non-prelim): 5
length of query: 595
length of database: 516,269
effective HSP length: 68
effective length of query: 527
effective length of database: 371,905
effective search space: 195993935
effective search space used: 195993935
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 50 (24.2 bits)