Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001347-TA|BGIBMGA001347-PA|IPR009911|Fibroin P25
         (220 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44234| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.43 
SB_47759| Best HMM Match : ASC (HMM E-Value=1.49939e-42)               30   1.3  

>SB_44234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 218

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 16/44 (36%), Positives = 22/44 (50%)

Query: 135 SYPLIRLTTVFDKGNNFDLCSAFTFADLAGGLPIFHINPNDQRT 178
           S+    +  +F    NF   +   F DL+  LPIFHI  ND+ T
Sbjct: 162 SHTATLIDNMFCNRPNFSQIADILFNDLSDHLPIFHICTNDENT 205


>SB_47759| Best HMM Match : ASC (HMM E-Value=1.49939e-42)
          Length = 464

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 5/65 (7%)

Query: 93  NVRTLKTVLTVDCPWLNFESNRTLAQHMSFKEDVVLSFYINGSYPLIRLTTVFDKGNNFD 152
           NV TL+++ T    W N       A   SFKE +VL  Y  G YP   +    ++ NN  
Sbjct: 159 NVTTLRSLYTKS--WSNVPEQFIKAYSASFKETIVLCRY--GLYP-CNMKLFTEQVNNIG 213

Query: 153 LCSAF 157
            C +F
Sbjct: 214 RCFSF 218


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.327    0.141    0.464 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,349,410
Number of Sequences: 59808
Number of extensions: 298631
Number of successful extensions: 631
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 630
Number of HSP's gapped (non-prelim): 2
length of query: 220
length of database: 16,821,457
effective HSP length: 79
effective length of query: 141
effective length of database: 12,096,625
effective search space: 1705624125
effective search space used: 1705624125
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 58 (27.5 bits)