GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001347-TA|BGIBMGA001347-PA|IPR009911|Fibroin P25
         (220 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1303 - 36132588-36132710,36133879-36134103,36134318-361347...    29   3.9  
03_05_0998 - 29574286-29574308,29574400-29574490,29574578-295747...    27   9.1  

>01_06_1303 -
           36132588-36132710,36133879-36134103,36134318-36134713,
           36135352-36135547,36135591-36135740,36135818-36135924,
           36135987-36136094,36136354-36136435,36136436-36136536,
           36136778-36136996,36137455-36137583,36137665-36137742,
           36137816-36137929,36138071-36138230,36139224-36139441
          Length = 801

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 2/43 (4%)

Query: 71  TYVDHNLITRNHDKCRVSEFYDNVRTLKTVLTVDCPWLNFESN 113
           TYV   +I  NH   R+ EF    + L     ++C W+    N
Sbjct: 139 TYVIPGIINYNHS--RIDEFIKKAQDLLDPTVLECAWMELSEN 179


>03_05_0998 -
           29574286-29574308,29574400-29574490,29574578-29574751,
           29574831-29574902,29574983-29575051,29575129-29575194,
           29575292-29575483,29575589-29575704,29575843-29576023
          Length = 327

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 5/98 (5%)

Query: 87  VSEFYDNVRTLKTVLTVDCPWLNFESNRTLAQHMSFKEDVVLSFYINGSYP-LIRLTTVF 145
           V      V  L   L    P L+F+  + L++ M   +D  L+FY  G  P    L   F
Sbjct: 200 VQSLQRQVEFLSMKLATVNPELSFDIEQILSKQMMLSQDRHLAFY--GVDPGSSALVAHF 257

Query: 146 DKG--NNFDLCSAFTFADLAGGLPIFHINPNDQRTAQW 181
           ++G      LC+    AD+  G  I  I+  +Q  A W
Sbjct: 258 NQGIMQPEMLCNVSNPADVLQGTTIQDISTVNQIPAMW 295


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.327    0.141    0.464 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,175,274
Number of Sequences: 37544
Number of extensions: 246101
Number of successful extensions: 497
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 497
Number of HSP's gapped (non-prelim): 2
length of query: 220
length of database: 14,793,348
effective HSP length: 79
effective length of query: 141
effective length of database: 11,827,372
effective search space: 1667659452
effective search space used: 1667659452
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 58 (27.5 bits)