GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001347-TA|BGIBMGA001347-PA|IPR009911|Fibroin P25
         (220 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64845-2|AAC48031.2|  980|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z82068-2|CAB04898.2|  233|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z81548-3|CAB04465.1|  916|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z81503-5|CAB04114.1|  916|Caenorhabditis elegans Hypothetical pr...    28   6.0  

>U64845-2|AAC48031.2|  980|Caenorhabditis elegans Hypothetical
           protein F45F2.10 protein.
          Length = 980

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 6/54 (11%)

Query: 160 ADLAGGLPIFHINPNDQRTAQWLSKDLTLLHIYEREHIFGKRNWLARSFISRTL 213
           AD+ G L + H+ P   R A   +K+L+  H Y+ + I    ++ AR FI++ L
Sbjct: 580 ADIGGSLSLNHVQPRTPRQA--ANKELSEYHDYQAKSI----SYKAREFINQRL 627


>Z82068-2|CAB04898.2|  233|Caenorhabditis elegans Hypothetical
           protein W04A4.4 protein.
          Length = 233

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/34 (41%), Positives = 19/34 (55%)

Query: 81  NHDKCRVSEFYDNVRTLKTVLTVDCPWLNFESNR 114
           N+D+ RV EF    R  K +LTV  P +  ES +
Sbjct: 88  NNDENRVWEFIQENRNSKFILTVSTPTIEEESEK 121


>Z81548-3|CAB04465.1|  916|Caenorhabditis elegans Hypothetical
           protein F14F7.5 protein.
          Length = 916

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 6/50 (12%)

Query: 29  LDDYKCISDHLAAISKC-IPGRGQIPSQYEIPVFQFEIPYFNATYVDHNL 77
           L  +K +S HL AI+KC   G     S  E+PV      Y N  ++D  L
Sbjct: 401 LSYFKSVSAHLEAITKCDASGSSSTESLTELPVI-----YANMKFLDQGL 445


>Z81503-5|CAB04114.1|  916|Caenorhabditis elegans Hypothetical
           protein F14F7.5 protein.
          Length = 916

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 6/50 (12%)

Query: 29  LDDYKCISDHLAAISKC-IPGRGQIPSQYEIPVFQFEIPYFNATYVDHNL 77
           L  +K +S HL AI+KC   G     S  E+PV      Y N  ++D  L
Sbjct: 401 LSYFKSVSAHLEAITKCDASGSSSTESLTELPVI-----YANMKFLDQGL 445


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.327    0.141    0.464 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,562,706
Number of Sequences: 27539
Number of extensions: 236073
Number of successful extensions: 510
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 509
Number of HSP's gapped (non-prelim): 4
length of query: 220
length of database: 12,573,161
effective HSP length: 79
effective length of query: 141
effective length of database: 10,397,580
effective search space: 1466058780
effective search space used: 1466058780
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 58 (27.5 bits)