GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001347-TA|BGIBMGA001347-PA|IPR009911|Fibroin P25
         (220 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    25   0.42 
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    25   0.42 

>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 25.4 bits (53), Expect = 0.42
 Identities = 14/58 (24%), Positives = 27/58 (46%)

Query: 67  YFNATYVDHNLITRNHDKCRVSEFYDNVRTLKTVLTVDCPWLNFESNRTLAQHMSFKE 124
           YF+ TY+ +  +   H+K  ++E   +  TL+  +  +   L  +   TL Q +   E
Sbjct: 39  YFHHTYIIYESLCGRHEKRLLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDE 96


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 25.4 bits (53), Expect = 0.42
 Identities = 14/58 (24%), Positives = 27/58 (46%)

Query: 67  YFNATYVDHNLITRNHDKCRVSEFYDNVRTLKTVLTVDCPWLNFESNRTLAQHMSFKE 124
           YF+ TY+ +  +   H+K  ++E   +  TL+  +  +   L  +   TL Q +   E
Sbjct: 39  YFHHTYIIYESLCGRHEKRLLNELLSSYNTLERPVANESEPLEVKFGITLQQIIDVDE 96


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.327    0.141    0.464 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,228
Number of Sequences: 429
Number of extensions: 2804
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 220
length of database: 140,377
effective HSP length: 55
effective length of query: 165
effective length of database: 116,782
effective search space: 19269030
effective search space used: 19269030
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 42 (21.0 bits)