GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001347-TA|BGIBMGA001347-PA|IPR009911|Fibroin P25
         (220 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g17820.1 68414.m02206 expressed protein                             30   1.1  
At5g41460.1 68418.m05035 fringe-related protein strong similarit...    28   4.3  
At3g14860.2 68416.m01879 NHL repeat-containing protein contains ...    28   4.3  
At3g14860.1 68416.m01878 NHL repeat-containing protein contains ...    28   4.3  

>At1g17820.1 68414.m02206 expressed protein
          Length = 803

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 10/38 (26%), Positives = 20/38 (52%)

Query: 30  DDYKCISDHLAAISKCIPGRGQIPSQYEIPVFQFEIPY 67
           +D K  S H ++  KC PG+  +    ++P+F   + +
Sbjct: 266 EDRKTYSHHGSSSGKCFPGKNNMTDDTDVPIFSRSVSH 303


>At5g41460.1 68418.m05035 fringe-related protein strong similarity
           to unknown protein (pir||T13026) similarity to predicted
           proteins + similar to hypothetical protein GB:AAC23643
           [Arabidopsis thaliana] + weak similarity to Fringe
           [Schistocerca gregaria](GI:6573138);Fringe encodes an
           extracellular protein that regulates Notch signalling.
          Length = 524

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 69  NATYVDHNL-ITRNHDKCRVSEFYDNVRTLKTVLTVDCPWLNFESNRT 115
           +ATYV + L +  N   C+V  F   VR L  ++    P + F +N+T
Sbjct: 41  SATYVVYTLKLISNSRACQVEPFSAVVRRLNDIVNSSQPLILFHTNQT 88


>At3g14860.2 68416.m01879 NHL repeat-containing protein contains
           Pfam profile PF01436: NHL repeat
          Length = 493

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 30/115 (26%), Positives = 43/115 (37%), Gaps = 3/115 (2%)

Query: 38  HLAAISKCIPGRGQIPSQYEIPVFQFEIPYFNATYVDHNLITRNHDKCRVS---EFYDNV 94
           H++++ K   G     SQ +  V QFE  Y   T V+ N I     K RVS   E Y   
Sbjct: 48  HMSSVLKWTTGSSSKLSQSDTNVLQFENGYLVETVVEGNDIGVVPYKIRVSDDGELYAVD 107

Query: 95  RTLKTVLTVDCPWLNFESNRTLAQHMSFKEDVVLSFYINGSYPLIRLTTVFDKGN 149
                ++ +  P   +   R +A     K            +   R  T+ DKGN
Sbjct: 108 ELNSNIMKITPPLSQYSRGRLVAGSFQGKTGHADGKPSEARFNHPRGVTMDDKGN 162


>At3g14860.1 68416.m01878 NHL repeat-containing protein contains
           Pfam profile PF01436: NHL repeat
          Length = 492

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 30/115 (26%), Positives = 43/115 (37%), Gaps = 3/115 (2%)

Query: 38  HLAAISKCIPGRGQIPSQYEIPVFQFEIPYFNATYVDHNLITRNHDKCRVS---EFYDNV 94
           H++++ K   G     SQ +  V QFE  Y   T V+ N I     K RVS   E Y   
Sbjct: 48  HMSSVLKWTTGSSSKLSQSDTNVLQFENGYLVETVVEGNDIGVVPYKIRVSDDGELYAVD 107

Query: 95  RTLKTVLTVDCPWLNFESNRTLAQHMSFKEDVVLSFYINGSYPLIRLTTVFDKGN 149
                ++ +  P   +   R +A     K            +   R  T+ DKGN
Sbjct: 108 ELNSNIMKITPPLSQYSRGRLVAGSFQGKTGHADGKPSEARFNHPRGVTMDDKGN 162


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.327    0.141    0.464 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,173,208
Number of Sequences: 28952
Number of extensions: 211610
Number of successful extensions: 474
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 472
Number of HSP's gapped (non-prelim): 5
length of query: 220
length of database: 12,070,560
effective HSP length: 78
effective length of query: 142
effective length of database: 9,812,304
effective search space: 1393347168
effective search space used: 1393347168
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 58 (27.5 bits)