Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001346-TA|BGIBMGA001346-PA|undefined
         (1624 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    28   0.45 
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    28   0.45 
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    28   0.45 
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    27   0.79 
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    27   0.79 
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    27   0.79 
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    27   0.79 
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           27   0.79 
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    27   0.79 
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    27   0.79 
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    24   9.8  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 28.3 bits (60), Expect = 0.45
 Identities = 45/215 (20%), Positives = 85/215 (39%), Gaps = 25/215 (11%)

Query: 970  AMQTLKPQLLDKANNMIAQAARNSSSYKQQLVHSITNHIPLMTIDMQAEDPERLYDDMLK 1029
            A+Q ++ +  +K + ++     N+   +  L  S+      M    +A++ E      ++
Sbjct: 1047 AVQKIEEKKPEKKDKVLTFLGANAQDDEGGLEFSVNKLFKCMICTYKADNKENEQLRKIQ 1106

Query: 1030 MAIADNFILFTKYNEEDKFQANMFKKKVANRVNELVENIKNTHGFALYNLDFDRIKDEVM 1089
             ++ D   L  K    +K Q    +    + V   +E  K T            +K+ V 
Sbjct: 1107 ESLRD---LNRKIESLEKMQYPDLRSPAVSNVTTFMEGSKAT------------VKNNVE 1151

Query: 1090 NALTRVPLPTDDEMKDEVDEVLLGMDIDHWFSDLPLVQSEDNY-ECVQQRRLRDLLTKKI 1148
            +     P     +  DEV E       + WF D PL++ E +Y    ++    +L+ + +
Sbjct: 1152 DNYMEAPQDNVSQPSDEVME-------NSWFYDGPLIRGEVHYLNRNEETFWNELIEQYL 1204

Query: 1149 HDIE-KRPNTSEEAIDLEIKQE-TLRVLQKLHLRV 1181
            H IE  +   S E  DL  K   T  +L  L++ V
Sbjct: 1205 HPIEDDKKKVSAELKDLRDKMVFTFLMLNSLYVIV 1239


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 28.3 bits (60), Expect = 0.45
 Identities = 45/215 (20%), Positives = 85/215 (39%), Gaps = 25/215 (11%)

Query: 970  AMQTLKPQLLDKANNMIAQAARNSSSYKQQLVHSITNHIPLMTIDMQAEDPERLYDDMLK 1029
            A+Q ++ +  +K + ++     N+   +  L  S+      M    +A++ E      ++
Sbjct: 1047 AVQKIEEKKPEKKDKVLTFLGANAQDDEGGLEFSVNKLFKCMICTYKADNKENEQLRKIQ 1106

Query: 1030 MAIADNFILFTKYNEEDKFQANMFKKKVANRVNELVENIKNTHGFALYNLDFDRIKDEVM 1089
             ++ D   L  K    +K Q    +    + V   +E  K T            +K+ V 
Sbjct: 1107 ESLRD---LNRKIESLEKMQYPDLRSPAVSNVTTFMEGSKAT------------VKNNVE 1151

Query: 1090 NALTRVPLPTDDEMKDEVDEVLLGMDIDHWFSDLPLVQSEDNY-ECVQQRRLRDLLTKKI 1148
            +     P     +  DEV E       + WF D PL++ E +Y    ++    +L+ + +
Sbjct: 1152 DNYMEAPQDNVSQPSDEVME-------NSWFYDGPLIRGEVHYLNRNEETFWNELIEQYL 1204

Query: 1149 HDIE-KRPNTSEEAIDLEIKQE-TLRVLQKLHLRV 1181
            H IE  +   S E  DL  K   T  +L  L++ V
Sbjct: 1205 HPIEDDKKKVSAELKDLRDKMVFTFLMLNSLYVIV 1239


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
            protein.
          Length = 312

 Score = 28.3 bits (60), Expect = 0.45
 Identities = 37/164 (22%), Positives = 61/164 (37%), Gaps = 9/164 (5%)

Query: 1309 GQQELNQQSQVQTTPSSNIQRSHQLPPHYQQMSQVVPQHTQHNTLQQSAIDYLQPPPQLN 1368
            GQQ  +QQS    T   N   +   PP      QV PQ+ QH     +    LQ P   +
Sbjct: 15   GQQARDQQSS-PGTDYYNPNANSTYPPACYSPPQVAPQYPQHPYAAPAPGHGLQ-PTMGD 72

Query: 1369 NSQIYXXXXXXXXXVLEAPGTQSSHVYPQSPKQGEMFMQPCQIPGPSNVTQRGYV--AST 1426
             +Q+           L++P TQ+   +P +  +         +  P +++  G    ++ 
Sbjct: 73   YTQLQPQRLASTH--LQSPNTQT---HPSASCKYADSTSSTGVASPQDLSTNGAPPRSTP 127

Query: 1427 PQHDASASNFQKQFVSVSPNFSINQQPNQATPVLNSSQIAGPSN 1470
            P    S SN  K     SP       P +      S  ++ P++
Sbjct: 128  PLSTPSNSNATKSSGLTSPLSVSTSPPGKPATSTTSQNLSSPAS 171


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
            protein.
          Length = 312

 Score = 27.5 bits (58), Expect = 0.79
 Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 9/66 (13%)

Query: 1309 GQQELNQQSQVQTTPSSNIQRSHQLPPHYQQMSQVVPQHTQH--------NTLQQSAIDY 1360
            GQQ  +QQS    T   N   +   PP      QV PQ+ QH        + LQ +  DY
Sbjct: 15   GQQARDQQSS-PGTDYYNPNANSTYPPACYSPPQVAPQYPQHPYAAPAPGHGLQPTMGDY 73

Query: 1361 LQPPPQ 1366
             Q  PQ
Sbjct: 74   TQLQPQ 79


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
            protein.
          Length = 230

 Score = 27.5 bits (58), Expect = 0.79
 Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 9/66 (13%)

Query: 1309 GQQELNQQSQVQTTPSSNIQRSHQLPPHYQQMSQVVPQHTQH--------NTLQQSAIDY 1360
            GQQ  +QQS    T   N   +   PP      QV PQ+ QH        + LQ +  DY
Sbjct: 15   GQQARDQQSS-PGTDYYNPNANSTYPPACYSPPQVAPQYPQHPYAAPAPGHGLQPTMGDY 73

Query: 1361 LQPPPQ 1366
             Q  PQ
Sbjct: 74   TQLQPQ 79


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
            protein.
          Length = 312

 Score = 27.5 bits (58), Expect = 0.79
 Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 9/66 (13%)

Query: 1309 GQQELNQQSQVQTTPSSNIQRSHQLPPHYQQMSQVVPQHTQH--------NTLQQSAIDY 1360
            GQQ  +QQS    T   N   +   PP      QV PQ+ QH        + LQ +  DY
Sbjct: 15   GQQARDQQSS-PGTDYYNPNANSTYPPACYSPPQVAPQYPQHPYAAPAPGHGLQPTMGDY 73

Query: 1361 LQPPPQ 1366
             Q  PQ
Sbjct: 74   TQLQPQ 79


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
            protein.
          Length = 297

 Score = 27.5 bits (58), Expect = 0.79
 Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 9/66 (13%)

Query: 1309 GQQELNQQSQVQTTPSSNIQRSHQLPPHYQQMSQVVPQHTQH--------NTLQQSAIDY 1360
            GQQ  +QQS    T   N   +   PP      QV PQ+ QH        + LQ +  DY
Sbjct: 15   GQQARDQQSS-PGTDYYNPNANSTYPPACYSPPQVAPQYPQHPYAAPAPGHGLQPTMGDY 73

Query: 1361 LQPPPQ 1366
             Q  PQ
Sbjct: 74   TQLQPQ 79


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 27.5 bits (58), Expect = 0.79
 Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 9/66 (13%)

Query: 1309 GQQELNQQSQVQTTPSSNIQRSHQLPPHYQQMSQVVPQHTQH--------NTLQQSAIDY 1360
            GQQ  +QQS    T   N   +   PP      QV PQ+ QH        + LQ +  DY
Sbjct: 15   GQQARDQQSS-PGTDYYNPNANSTYPPACYSPPQVAPQYPQHPYAAPAPGHGLQPTMGDY 73

Query: 1361 LQPPPQ 1366
             Q  PQ
Sbjct: 74   TQLQPQ 79


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
            protein.
          Length = 157

 Score = 27.5 bits (58), Expect = 0.79
 Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 9/66 (13%)

Query: 1309 GQQELNQQSQVQTTPSSNIQRSHQLPPHYQQMSQVVPQHTQH--------NTLQQSAIDY 1360
            GQQ  +QQS    T   N   +   PP      QV PQ+ QH        + LQ +  DY
Sbjct: 15   GQQARDQQSS-PGTDYYNPNANSTYPPACYSPPQVAPQYPQHPYAAPAPGHGLQPTMGDY 73

Query: 1361 LQPPPQ 1366
             Q  PQ
Sbjct: 74   TQLQPQ 79


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced Scr
            protein.
          Length = 312

 Score = 27.5 bits (58), Expect = 0.79
 Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 9/66 (13%)

Query: 1309 GQQELNQQSQVQTTPSSNIQRSHQLPPHYQQMSQVVPQHTQH--------NTLQQSAIDY 1360
            GQQ  +QQS    T   N   +   PP      QV PQ+ QH        + LQ +  DY
Sbjct: 15   GQQARDQQSS-PGTDYYNPNANSTYPPACYSPPQVAPQYPQHPYAAPAPGHGLQPTMGDY 73

Query: 1361 LQPPPQ 1366
             Q  PQ
Sbjct: 74   TQLQPQ 79


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 11/54 (20%)

Query: 583 KFQIFKWIHELVGDDKISNALDHADVLSQTIRSIPVPMLTLSQNPGNLKSSLPP 636
           K+ I K IH+ +G              ++ +  +P P+  ++Q P + K+  PP
Sbjct: 371 KYPILKAIHQTLGGSS-----------NEIVEPVPQPVEEVTQKPSSTKAPAPP 413


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.314    0.130    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 375,422
Number of Sequences: 317
Number of extensions: 16720
Number of successful extensions: 48
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 48
Number of HSP's gapped (non-prelim): 11
length of query: 1624
length of database: 114,650
effective HSP length: 66
effective length of query: 1558
effective length of database: 93,728
effective search space: 146028224
effective search space used: 146028224
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 49 (23.8 bits)