GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001346-TA|BGIBMGA001346-PA|undefined
         (1624 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     37   0.002
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             27   1.3  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    26   2.9  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    24   8.8  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 36.7 bits (81), Expect = 0.002
 Identities = 29/135 (21%), Positives = 62/135 (45%), Gaps = 8/135 (5%)

Query: 262 DILFKDSKKQSNFSKSRRHDMDKHRMIRRTASFNLDSLSLDNVLTVESRTNNCSKKSPAI 321
           D L    ++Q   SK   +  ++ + +       +++ ++ N+L++++   N     P +
Sbjct: 468 DTLQIQPQEQLTLSKVTSNYHEEFQSLNNAVG-EMEATNVTNILSMDNTQYNLDLSLPQL 526

Query: 322 DKTEL------LTQSLMELLHLNDNNMKRKTFRLIDYMFDNLNDGGPSLNELASFCLNRL 375
           D TEL      L+++L   L ++D+  K +T + I+    N+ +     +       N +
Sbjct: 527 DSTELADLDISLSENLSSGLSISDST-KPETSKGINAEPSNIEESNNMTDSFTRIANNTI 585

Query: 376 QNLFTLATLNKDTTE 390
           Q L+TL  + K T E
Sbjct: 586 QELYTLNNMYKPTRE 600



 Score = 24.6 bits (51), Expect = 6.7
 Identities = 8/23 (34%), Positives = 15/23 (65%)

Query: 1256 QQNIPYVNERREVTPEQWFTLEE 1278
            QQ  PYV++  ++ P++  TL +
Sbjct: 460  QQQFPYVHDTLQIQPQEQLTLSK 482


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 19/60 (31%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 1302 QQTASGAGQQELNQQSQVQTTPSSNIQRSHQLPPHYQQMSQVVPQHTQHNTLQQSAIDYL 1361
            Q+T     QQ+  QQ Q Q    S  Q   Q P   QQ  Q   Q  Q    +  A+  L
Sbjct: 1498 QKTQQQQPQQQQQQQQQQQPQQQSQ-QPQQQQPQPQQQQQQQQQQQPQQQQKEYGAVSGL 1556



 Score = 24.2 bits (50), Expect = 8.8
 Identities = 14/55 (25%), Positives = 20/55 (36%)

Query: 115 DGPGGHDRSCNVRRVESLKGEKCRRAPKSATVTSETQASVQTMSREVETAPRMEP 169
           DG G  DR  +    E   G     A K   +  +   +V  + RE +   R  P
Sbjct: 273 DGEGADDRDDDEENEEEEDGRGQSEAEKRLKLDEDADGAVSPLRREKDRGSREYP 327


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
            isoform protein.
          Length = 567

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 27/105 (25%), Positives = 40/105 (38%), Gaps = 8/105 (7%)

Query: 1275 TLEETKAPPGLRDYQSIQATSQ---FPSCCQQTASGAGQQE--LNQQSQVQTTPSSNIQR 1329
            T   T  PP +    ++  T+    FP         A   +   N  S V + PS+ +Q 
Sbjct: 47   TAAATPTPPSVPVGSAVAGTAGGALFPGMAAAGKGAARSDDWLANANSPVGS-PSAALQP 105

Query: 1330 SHQL--PPHYQQMSQVVPQHTQHNTLQQSAIDYLQPPPQLNNSQI 1372
             H +   P  QQ++    Q  QHN    S +      P   NS+I
Sbjct: 106  QHVVYGNPQQQQLAAETQQQQQHNNGYASPMSTSSYDPYSPNSKI 150


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 397 EVIKKS--LIKFTQKNKLKLKTANLEDMTSKLINICKNNNV 435
           +V+KK    I+   K  L +   + E+  S LIN  KNN +
Sbjct: 475 DVLKKGNFTIEILNKTVLAVVRQSEEEAVSLLINFSKNNTI 515


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.130    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 479,277
Number of Sequences: 429
Number of extensions: 22560
Number of successful extensions: 35
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 27
Number of HSP's gapped (non-prelim): 9
length of query: 1624
length of database: 140,377
effective HSP length: 67
effective length of query: 1557
effective length of database: 111,634
effective search space: 173814138
effective search space used: 173814138
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 50 (24.2 bits)