Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001345-TA|BGIBMGA001345-PA|undefined
         (62 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35564| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   0.94 
SB_49462| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   1.6  
SB_23054| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   3.8  
SB_9195| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   3.8  
SB_48438| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   3.8  
SB_57360| Best HMM Match : Peptidase_A17 (HMM E-Value=8.9e-29)         25   6.6  
SB_24712| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.6  
SB_3533| Best HMM Match : Pentapeptide (HMM E-Value=5.7)               25   8.8  

>SB_35564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1028

 Score = 28.3 bits (60), Expect = 0.94
 Identities = 15/39 (38%), Positives = 22/39 (56%)

Query: 15  VTLTDRPPGEGHSTPYKNNREGAGRTPLEMRWSTTWAKK 53
           VTL  +PP E   + +K N+E A +  L+ R  TT  K+
Sbjct: 751 VTLDLKPPSETTQSVHKKNKEIATKLDLDDRMDTTANKQ 789


>SB_49462| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 659

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)

Query: 36  GAGRTPLEMRWSTTWAK 52
           GAG+T L  +W++ WAK
Sbjct: 249 GAGKTTLTKKWASDWAK 265


>SB_23054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 482

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 15/44 (34%), Positives = 17/44 (38%)

Query: 12  RFRVTLTDRPPGEGHSTPYKNNREGAGRTPLEMRWSTTWAKKTT 55
           R R  L D  P          N E A R PL++     WA  TT
Sbjct: 332 RGRALLVDCSPSNLIEANRLRNHEPAMRNPLQINGKPPWAPNTT 375


>SB_9195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 203

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 10 PQRFRVTLTDRPPGEGHSTPYKNNRE 35
          PQ  + T T RPP E   T YK  ++
Sbjct: 48 PQSHKTTSTGRPPCETQGTTYKGAQD 73


>SB_48438| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 353

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/37 (27%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 26  HSTPYKNNREGAGRTPLEMRWSTTWAKKTTGYESRNV 62
           +++P + ++    R+P + RWS    ++   YE RN+
Sbjct: 128 YNSPSRRSKS-TSRSPSKERWSKFKRERVVAYEERNI 163


>SB_57360| Best HMM Match : Peptidase_A17 (HMM E-Value=8.9e-29)
          Length = 1354

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/24 (50%), Positives = 13/24 (54%)

Query: 18   TDRPPGEGHSTPYKNNREGAGRTP 41
            TD  P    STP K + EGA  TP
Sbjct: 1299 TDHVPPRRQSTPAKVHAEGAAPTP 1322


>SB_24712| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 468

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/24 (50%), Positives = 13/24 (54%)

Query: 18  TDRPPGEGHSTPYKNNREGAGRTP 41
           TD  P    STP K + EGA  TP
Sbjct: 430 TDHVPPRRQSTPAKVHAEGAAPTP 453


>SB_3533| Best HMM Match : Pentapeptide (HMM E-Value=5.7)
          Length = 416

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 36  GAGRTPLEMRWSTTWAKKTTGYES 59
           G  R+P+   W +   + TTGYES
Sbjct: 140 GHARSPIGFLWISAQQQITTGYES 163


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.313    0.129    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,540,252
Number of Sequences: 59808
Number of extensions: 92518
Number of successful extensions: 173
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 164
Number of HSP's gapped (non-prelim): 9
length of query: 62
length of database: 16,821,457
effective HSP length: 41
effective length of query: 21
effective length of database: 14,369,329
effective search space: 301755909
effective search space used: 301755909
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 52 (25.0 bits)