GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001345-TA|BGIBMGA001345-PA|undefined
         (62 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   0.41 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    19   2.9  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    19   5.1  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           18   8.9  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    18   8.9  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    18   8.9  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    18   8.9  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 0.41
 Identities = 11/31 (35%), Positives = 14/31 (45%)

Query: 1    MASLNITLIPQRFRVTLTDRPPGEGHSTPYK 31
            MA     ++P +   T T RP G   S  YK
Sbjct: 2292 MAPSTTPMVPDKPVTTTTSRPIGTDTSDDYK 2322



 Score = 17.8 bits (34), Expect = 8.9
 Identities = 5/10 (50%), Positives = 8/10 (80%)

Query: 46   WSTTWAKKTT 55
            W+TT  ++TT
Sbjct: 1052 WTTTTTRRTT 1061


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 19.4 bits (38), Expect = 2.9
 Identities = 8/24 (33%), Positives = 13/24 (54%)

Query: 10  PQRFRVTLTDRPPGEGHSTPYKNN 33
           PQ+   ++TD    +G + P  NN
Sbjct: 699 PQQRSPSVTDLSTKDGTTVPESNN 722


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 18.6 bits (36), Expect = 5.1
 Identities = 8/20 (40%), Positives = 10/20 (50%)

Query: 9   IPQRFRVTLTDRPPGEGHST 28
           + +R  VT  D P   GH T
Sbjct: 215 VKKREEVTQKDSPMNMGHLT 234


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 17.8 bits (34), Expect = 8.9
 Identities = 6/13 (46%), Positives = 8/13 (61%)

Query: 46  WSTTWAKKTTGYE 58
           W+  + KK  GYE
Sbjct: 195 WTGIFQKKWRGYE 207


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 17.8 bits (34), Expect = 8.9
 Identities = 6/18 (33%), Positives = 11/18 (61%)

Query: 39  RTPLEMRWSTTWAKKTTG 56
           R P  + + T+W++K  G
Sbjct: 520 RPPQVLCYITSWSQKRPG 537


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 17.8 bits (34), Expect = 8.9
 Identities = 8/25 (32%), Positives = 13/25 (52%)

Query: 32   NNREGAGRTPLEMRWSTTWAKKTTG 56
            N  E     P+EMR + +   +T+G
Sbjct: 1356 NEYEDQTEVPVEMRKTVSNLAQTSG 1380


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 17.8 bits (34), Expect = 8.9
 Identities = 8/25 (32%), Positives = 13/25 (52%)

Query: 32   NNREGAGRTPLEMRWSTTWAKKTTG 56
            N  E     P+EMR + +   +T+G
Sbjct: 1356 NEYEDQTEVPVEMRKTVSNLAQTSG 1380


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.313    0.129    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,839
Number of Sequences: 317
Number of extensions: 581
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 62
length of database: 114,650
effective HSP length: 42
effective length of query: 20
effective length of database: 101,336
effective search space:  2026720
effective search space used:  2026720
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.3 bits)
S2: 34 (17.8 bits)