GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001345-TA|BGIBMGA001345-PA|undefined
         (62 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.04 |||sulfhydryl oxidase |Schizosaccharomyces pombe|chr ...    22   8.3  
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    22   8.3  

>SPBC146.04 |||sulfhydryl oxidase |Schizosaccharomyces pombe|chr
          2|||Manual
          Length = 192

 Score = 22.2 bits (45), Expect = 8.3
 Identities = 8/12 (66%), Positives = 10/12 (83%)

Query: 33 NREGAGRTPLEM 44
          +REG GR P+EM
Sbjct: 45 DREGQGRKPIEM 56


>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 22.2 bits (45), Expect = 8.3
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 30  YKNNREGAGRTPLEMRWSTTWAKKTTGYESRNV 62
           Y N    +G TPL++ W T    +    E RN+
Sbjct: 444 YLNLLGQSGSTPLDLFWDTIVDLENMYREKRNL 476


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.129    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 318,054
Number of Sequences: 5004
Number of extensions: 10665
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 2
length of query: 62
length of database: 2,362,478
effective HSP length: 43
effective length of query: 19
effective length of database: 2,147,306
effective search space: 40798814
effective search space used: 40798814
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 45 (22.2 bits)