GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001345-TA|BGIBMGA001345-PA|undefined
         (62 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0534 + 26071227-26071811                                         30   0.27 
02_01_0560 - 4117565-4118176,4118443-4118477,4118836-4118962           29   0.62 
02_02_0223 - 8021040-8021247,8022275-8022367,8022808-8023059,802...    25   7.7  

>04_04_0534 + 26071227-26071811
          Length = 194

 Score = 29.9 bits (64), Expect = 0.27
 Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 3/34 (8%)

Query: 29  PYKNNREGAGRTPLEMRWSTTW---AKKTTGYES 59
           P +  R+ A R P   RW TTW   A K  GY S
Sbjct: 101 PARRRRDCAWRRPAAWRWLTTWRRTASKPDGYPS 134


>02_01_0560 - 4117565-4118176,4118443-4118477,4118836-4118962
          Length = 257

 Score = 28.7 bits (61), Expect = 0.62
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)

Query: 18 TDRPPGEGHSTPY-KNNREGAGRTPLEM 44
          T RP   G +TP  +  REG GR PL M
Sbjct: 11 TCRPTAGGRATPCGRRTREGGGRRPLRM 38


>02_02_0223 -
          8021040-8021247,8022275-8022367,8022808-8023059,
          8023143-8023597,8023667-8023983,8024019-8024298,
          8024423-8024728,8024762-8025130,8025216-8025455
          Length = 839

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)

Query: 21 PPGEGHSTPYKNNREGAGRTP 41
          PP EG +TP+++ R+   + P
Sbjct: 76 PPKEGETTPWRSKRQPKKKVP 96


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.313    0.129    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,243,855
Number of Sequences: 37544
Number of extensions: 81976
Number of successful extensions: 105
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 103
Number of HSP's gapped (non-prelim): 3
length of query: 62
length of database: 14,793,348
effective HSP length: 42
effective length of query: 20
effective length of database: 13,216,500
effective search space: 264330000
effective search space used: 264330000
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 52 (25.0 bits)