GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001345-TA|BGIBMGA001345-PA|undefined
         (62 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81568-11|CAB04593.1|  681|Caenorhabditis elegans Hypothetical p...    27   2.2  
Z81075-4|CAB03047.2|  596|Caenorhabditis elegans Hypothetical pr...    25   5.0  
AJ005701-1|CAA06686.1|  596|Caenorhabditis elegans Na/Ca,K-excha...    25   5.0  
U20864-8|AAC46665.2|  330|Caenorhabditis elegans Peroxisome asse...    25   8.8  

>Z81568-11|CAB04593.1|  681|Caenorhabditis elegans Hypothetical
           protein K08E3.6 protein.
          Length = 681

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 19/59 (32%), Positives = 23/59 (38%), Gaps = 1/59 (1%)

Query: 2   ASLNITLIPQRFRVTLTDRPPGEGHSTPYKNNREGAGRTPLEMRWSTTWAKKTTGYESR 60
           A+ N      R      D  P EG  TP K  R+       EM  +TT    TT + SR
Sbjct: 217 AAANSKRSRSRVMTATIDEEPNEG-GTPPKRCRDDGSTPHQEMTTTTTTTTTTTIHNSR 274


>Z81075-4|CAB03047.2|  596|Caenorhabditis elegans Hypothetical
           protein F35C12.2a protein.
          Length = 596

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query: 41  PLEMRWSTTWAKKTT 55
           PL+M W  TW K+ T
Sbjct: 384 PLDMTWPETWVKRLT 398


>AJ005701-1|CAA06686.1|  596|Caenorhabditis elegans
           Na/Ca,K-exchanger protein.
          Length = 596

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query: 41  PLEMRWSTTWAKKTT 55
           PL+M W  TW K+ T
Sbjct: 384 PLDMTWPETWVKRLT 398


>U20864-8|AAC46665.2|  330|Caenorhabditis elegans Peroxisome
           assembly factor protein13 protein.
          Length = 330

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 25  GHSTPYKNNREGAGRTPLEMRW 46
           G S PY  +  GA RTP  + W
Sbjct: 176 GTSQPYATDVLGATRTPASVNW 197


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.313    0.129    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,772,311
Number of Sequences: 27539
Number of extensions: 61242
Number of successful extensions: 77
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 74
Number of HSP's gapped (non-prelim): 4
length of query: 62
length of database: 12,573,161
effective HSP length: 42
effective length of query: 20
effective length of database: 11,416,523
effective search space: 228330460
effective search space used: 228330460
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 51 (24.6 bits)