GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001345-TA|BGIBMGA001345-PA|undefined
         (62 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    19   6.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              18   8.2  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 18.6 bits (36), Expect = 6.2
 Identities = 6/22 (27%), Positives = 9/22 (40%)

Query: 21  PPGEGHSTPYKNNREGAGRTPL 42
           PP    + P   N +   R P+
Sbjct: 766 PPPSAQNVPQNTNSQAIPRIPI 787


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 18.2 bits (35), Expect = 8.2
 Identities = 6/10 (60%), Positives = 7/10 (70%)

Query: 38  GRTPLEMRWS 47
           G  PL +RWS
Sbjct: 610 GDLPLNIRWS 619


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.129    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,209
Number of Sequences: 429
Number of extensions: 714
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 62
length of database: 140,377
effective HSP length: 42
effective length of query: 20
effective length of database: 122,359
effective search space:  2447180
effective search space used:  2447180
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.8 bits)
S2: 35 (18.2 bits)