GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001345-TA|BGIBMGA001345-PA|undefined
         (62 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74720.1 68414.m08658 C2 domain-containing protein contains I...    28   0.89 
At3g04140.1 68416.m00438 ankyrin repeat family protein contains ...    26   2.7  
At3g42190.1 68416.m04340 hypothetical protein                          25   6.3  
At5g03960.1 68418.m00376 calmodulin-binding family protein             25   8.3  

>At1g74720.1 68414.m08658 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 1081

 Score = 27.9 bits (59), Expect = 0.89
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 14  RVTLTDRPPGEGHSTPYKNNREGAGRTPLEMR 45
           R+ +T RPP   +S    N++ G G T +E +
Sbjct: 292 RIRVTKRPPNGDYSPRVINSKTGGGETTMEKK 323


>At3g04140.1 68416.m00438 ankyrin repeat family protein contains
           ankyrin repeats, Pfam:PF00023
          Length = 656

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 12/36 (33%), Positives = 17/36 (47%)

Query: 27  STPYKNNREGAGRTPLEMRWSTTWAKKTTGYESRNV 62
           ST  K  R G G T   ++    WAK+    E+R +
Sbjct: 477 STHSKRKRRGGGGTGARLKLLLRWAKREESEENRRL 512


>At3g42190.1 68416.m04340 hypothetical protein
          Length = 695

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 8   LIPQRFRVTLTDRPPGEGHSTPYKNNREGAGR 39
           ++P R  V   +  P EG  TPYK N +  GR
Sbjct: 536 VLPPR-AVAGNEDSPREGVETPYKFNMQDVGR 566


>At5g03960.1 68418.m00376 calmodulin-binding family protein
          Length = 403

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 10/52 (19%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 8   LIPQRFRV-TLTDRPPGEGHSTPYKNNREGAGRTPLEMRWSTTWAKKTTGYE 58
           L+P + ++ +L  +  G+G  +P+   R    R    +    +W +++ G++
Sbjct: 284 LVPTKVKLRSLQRQDSGDGQDSPFSFPRRSFSRLEQSILEDESWFQRSNGFQ 335


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.313    0.129    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,702,218
Number of Sequences: 28952
Number of extensions: 59392
Number of successful extensions: 58
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 55
Number of HSP's gapped (non-prelim): 4
length of query: 62
length of database: 12,070,560
effective HSP length: 42
effective length of query: 20
effective length of database: 10,854,576
effective search space: 217091520
effective search space used: 217091520
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 51 (24.6 bits)