GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001343-TA|BGIBMGA001343-PA|IPR000608|Ubiquitin-
conjugating enzyme, E2
         (201 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15708| Best HMM Match : UQ_con (HMM E-Value=0)                      52   3e-07
SB_44322| Best HMM Match : UQ_con (HMM E-Value=1.6e-37)                49   3e-06
SB_26077| Best HMM Match : UQ_con (HMM E-Value=6e-18)                  41   8e-04
SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)                      38   0.008
SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.017
SB_28696| Best HMM Match : UQ_con (HMM E-Value=5.3e-30)                34   0.070
SB_33407| Best HMM Match : UQ_con (HMM E-Value=0)                      32   0.28 
SB_40772| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.37 
SB_7202| Best HMM Match : UQ_con (HMM E-Value=5.9e-05)                 30   1.5  
SB_30411| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_33408| Best HMM Match : UQ_con (HMM E-Value=3.7e-07)                29   2.0  
SB_33522| Best HMM Match : SCPU (HMM E-Value=6.8)                      27   8.0  

>SB_15708| Best HMM Match : UQ_con (HMM E-Value=0)
          Length = 145

 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 3/117 (2%)

Query: 17  ESSFL-WYGVIFVRSGLYEGGVFRFTITLPEKFPDDETPVLTFVSNLYHPAIDASTGLLS 75
           ES+ L W G+I      Y  G FR  I  P ++P  + P +TF + +YHP ID   G + 
Sbjct: 20  ESNILYWQGLIVPEMPPYNKGAFRIEICFPAEYP-FKPPKITFKTKIYHPNID-EKGQVC 77

Query: 76  LREVFPMWDKKRDHVWQILKYLHIIFDNLSIKVPANTEAACMYKTNRKFFMQKVREC 132
           L  + P   K      Q+++ L  +  +   + P   + A  Y  ++K FM+   +C
Sbjct: 78  LPIISPENWKPATKTEQVIQALLALVHDPEPEHPLRADLAEEYSKDKKKFMKNAEDC 134


>SB_44322| Best HMM Match : UQ_con (HMM E-Value=1.6e-37)
          Length = 190

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 31/102 (30%), Positives = 55/102 (53%), Gaps = 5/102 (4%)

Query: 33  YEGGVFRFTITLPEKFPDDETPVLTFVSNLYHPAIDASTGL-LSLREVFP--MWDKKRDH 89
           Y  G+F+  I +PE++P  E P + FV+ +YHP ID+S  + L   ++ P  MW K   +
Sbjct: 10  YHKGIFKLDIQIPERYPF-EPPKVRFVTPIYHPNIDSSGRICLDTLKMPPKGMW-KPALN 67

Query: 90  VWQILKYLHIIFDNLSIKVPANTEAACMYKTNRKFFMQKVRE 131
           +  +L  + I+    +   P   E +  +K N+  F++K +E
Sbjct: 68  ISSVLSTILILMAEPNPDDPLMAEISNEFKYNKAQFLEKAKE 109


>SB_26077| Best HMM Match : UQ_con (HMM E-Value=6e-18)
          Length = 215

 Score = 40.7 bits (91), Expect = 8e-04
 Identities = 28/98 (28%), Positives = 52/98 (53%), Gaps = 5/98 (5%)

Query: 13  IPSYESSFLWYGV-IFVRSGLYEGGVFRFTITLPEKFPDDETPVLTFVSNLYHPAIDAST 71
           I +YE +   + + I    G Y GG F+F++   E +P+   PV   V+N+YHP +D   
Sbjct: 29  ITNYEDNMEEFELQITPTDGAYRGGQFKFSVKT-EDYPNTP-PVPRCVNNIYHPNMDLDD 86

Query: 72  GLLSLREVFPMWDKKRDHVWQILKYLHIIFDNLSIKVP 109
           G + L  +   W++  D +  +++ L  +F N +++ P
Sbjct: 87  GSVCL-SLLDDWNESND-LEDLVQGLLFLFYNPNLEDP 122


>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
          Length = 1282

 Score = 37.5 bits (83), Expect = 0.008
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 3/68 (4%)

Query: 2    LQTENLRGIYV-IPSYESSFLWYGVIFVRSG-LYEGGVFRFTITLPEKFPDDETPVLTFV 59
            L  E + G  V +P   ++F W   IF   G LY GG F+  ++ P  +P    P   F+
Sbjct: 1136 LTEEPVEGFTVEVPDESNTFEWDVAIFGPPGTLYAGGYFKAHMSFPHDYP-YSPPTFRFL 1194

Query: 60   SNLYHPAI 67
            + ++HP I
Sbjct: 1195 TKMWHPNI 1202


>SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 473

 Score = 36.3 bits (80), Expect = 0.017
 Identities = 13/35 (37%), Positives = 24/35 (68%), Gaps = 1/35 (2%)

Query: 33  YEGGVFRFTITLPEKFPDDETPVLTFVSNLYHPAI 67
           YE G F+ ++  P+++P    P LTF+S+++HP +
Sbjct: 377 YEEGYFKASMVFPKEYPQ-RPPTLTFISDIWHPNV 410


>SB_28696| Best HMM Match : UQ_con (HMM E-Value=5.3e-30)
          Length = 204

 Score = 34.3 bits (75), Expect = 0.070
 Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 4/83 (4%)

Query: 52  ETPVLTFVSNLYHPAIDASTGL-LSLREVFP--MWDKKRDHVWQILKYLHIIFDNLSIKV 108
           E P + FV+ +YHP ID+S  + L   ++ P  MW K   ++  +L  + I+    +   
Sbjct: 42  EPPKVRFVTPIYHPNIDSSGRICLDTLKMPPKGMW-KPALNISSVLSTILILMAEPNPDD 100

Query: 109 PANTEAACMYKTNRKFFMQKVRE 131
           P   E +  +K N+  F++K +E
Sbjct: 101 PLMAEISNEFKYNKAQFLEKAKE 123


>SB_33407| Best HMM Match : UQ_con (HMM E-Value=0)
          Length = 226

 Score = 32.3 bits (70), Expect = 0.28
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 14  PSYESSFLWYGVIFVRSG-LYEGGVFRFTITLPEKF---PDDETPVLTFVSNLYHPAIDA 69
           P  +  + WY  I    G +YEGGVF   I  P  +   P      L  + + + PA+  
Sbjct: 119 PKGDDLYEWYSTILGPPGSVYEGGVFFLDIHFPSDYPFKPPKGMVCLDILKDSWSPALTI 178

Query: 70  STGLLSL 76
           S  LLS+
Sbjct: 179 SKVLLSI 185


>SB_40772| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 178

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 37  VFRFTITLPEKFPDDETPVLTFVSNLYHPAIDASTGLLSLRE 78
           +FR    L E FPD   P++ F SN++HP I  +    SL E
Sbjct: 107 LFREQFILAEYFPDSR-PLVKFTSNVFHPQIHENGVHSSLEE 147


>SB_7202| Best HMM Match : UQ_con (HMM E-Value=5.9e-05)
          Length = 200

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 14  PSYESSFLWYGVIFVRSG-LYEGGVFRFTITLPEKFP 49
           P  +  + WY  I    G +YEGGVF   I  P  +P
Sbjct: 159 PKGDDLYEWYSTILGPPGSVYEGGVFFLDIHFPSDYP 195


>SB_30411| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 710

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 33 YEGGVFRFTITLPEKFPDDETPVLTF 58
          YEGGV++  + LPEK+P     +  F
Sbjct: 62 YEGGVWKVRVDLPEKYPFKSPSIANF 87


>SB_33408| Best HMM Match : UQ_con (HMM E-Value=3.7e-07)
          Length = 181

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 14 PSYESSFLWYGVIFVRSG-LYEGGVFRFTITLPEKFP 49
          P  +  + WY  I    G +YEGGVF   I  P  +P
Sbjct: 46 PKGDKLYEWYSTILGPPGSVYEGGVFFLDIHFPTDYP 82


>SB_33522| Best HMM Match : SCPU (HMM E-Value=6.8)
          Length = 295

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 13  IPSYESSFLWYGVIFVRSGLYEGGVFRFTITLPEKFPDDETPVLTFVSNLYHPAIDASTG 72
           +P Y S     G I V      G   + T T+ EK P ++T   T+VS  Y   +    G
Sbjct: 102 MPLYYSLIARGGTILVDYAETTGNFQQVTYTILEKIPGNDTK-CTYVSGSYQFHVIVEDG 160

Query: 73  LLSL 76
           L+ L
Sbjct: 161 LVYL 164


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.322    0.138    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,295,425
Number of Sequences: 59808
Number of extensions: 313237
Number of successful extensions: 508
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 503
Number of HSP's gapped (non-prelim): 12
length of query: 201
length of database: 16,821,457
effective HSP length: 79
effective length of query: 122
effective length of database: 12,096,625
effective search space: 1475788250
effective search space used: 1475788250
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)