Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001343-TA|BGIBMGA001343-PA|IPR000608|Ubiquitin-
conjugating enzyme, E2
(201 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g14400.2 68414.m01708 ubiquitin-conjugating enzyme 1 (UBC1) E... 60 8e-10
At1g14400.1 68414.m01707 ubiquitin-conjugating enzyme 1 (UBC1) E... 60 8e-10
At2g02760.1 68415.m00219 ubiquitin-conjugating enzyme 2 (UBC2) E... 60 1e-09
At2g46030.1 68415.m05726 ubiquitin-conjugating enzyme 6 (UBC6) E... 56 1e-08
At1g63800.1 68414.m07220 ubiquitin-conjugating enzyme 5 (UBC5) E... 56 2e-08
At5g62540.1 68418.m07849 ubiquitin-conjugating enzyme 3 (UBC3) E... 55 3e-08
At5g41340.1 68418.m05024 ubiquitin-conjugating enzyme 4 (UBC4) E... 55 3e-08
At3g55380.1 68416.m06151 ubiquitin-conjugating enzyme 14 (UBC14)... 47 8e-06
At2g32790.1 68415.m04014 ubiquitin-conjugating enzyme, putative ... 46 2e-05
At1g78870.1 68414.m09193 ubiquitin-conjugating enzyme, putative ... 45 4e-05
At5g59300.1 68418.m07430 ubiquitin-conjugating enzyme 7 (UBC7) E... 44 7e-05
At5g50870.1 68418.m06304 ubiquitin-conjugating enzyme, putative ... 44 7e-05
At3g24515.1 68416.m03077 ubiquitin-conjugating enzyme, putative ... 44 7e-05
At1g78870.2 68414.m09194 ubiquitin-conjugating enzyme, putative ... 44 7e-05
At1g36340.1 68414.m04516 ubiquitin-conjugating enzyme family pro... 44 7e-05
At1g16890.2 68414.m02044 ubiquitin-conjugating enzyme, putative ... 44 7e-05
At3g13550.1 68416.m01703 ubiquitin-conjugating enzyme (COP10) id... 44 9e-05
At5g41700.4 68418.m05071 ubiquitin-conjugating enzyme 8 (UBC8) E... 42 3e-04
At3g08690.1 68416.m01010 ubiquitin-conjugating enzyme 11 (UBC11)... 42 4e-04
At1g64230.1 68414.m07276 ubiquitin-conjugating enzyme, putative ... 42 4e-04
At4g27960.2 68417.m04012 ubiquitin-conjugating enzyme E2-17 kDa ... 41 5e-04
At4g27960.1 68417.m04011 ubiquitin-conjugating enzyme E2-17 kDa ... 41 5e-04
At1g16890.1 68414.m02043 ubiquitin-conjugating enzyme, putative ... 41 5e-04
At5g53300.2 68418.m06625 ubiquitin-conjugating enzyme 10 (UBC10)... 41 7e-04
At5g53300.1 68418.m06624 ubiquitin-conjugating enzyme 10 (UBC10)... 41 7e-04
At5g41700.2 68418.m05070 ubiquitin-conjugating enzyme 8 (UBC8) E... 41 7e-04
At5g41700.1 68418.m05069 ubiquitin-conjugating enzyme 8 (UBC8) E... 41 7e-04
At5g25760.1 68418.m03057 ubiquitin-conjugating enzyme, putative ... 40 0.001
At3g46460.1 68416.m05037 ubiquitin-conjugating enzyme 13 (UBC13)... 40 0.002
At2g18600.1 68415.m02166 RUB1-conjugating enzyme, putative stron... 38 0.004
At2g16740.1 68415.m01920 ubiquitin-conjugating enzyme, putative ... 37 0.011
At5g41700.3 68418.m05068 ubiquitin-conjugating enzyme 8 (UBC8) E... 36 0.025
At3g08700.1 68416.m01011 ubiquitin-conjugating enzyme, putative ... 36 0.025
At5g05080.1 68418.m00539 ubiquitin-conjugating enzyme, putative ... 32 0.23
At5g05680.1 68418.m00625 nuclear pore complex protein-related co... 30 1.2
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex... 29 2.8
At5g17790.1 68418.m02086 zinc finger (Ran-binding) family protei... 28 3.8
At3g63210.1 68416.m07101 expressed protein identical to senescen... 28 3.8
At1g31120.1 68414.m03808 potassium transporter family protein si... 28 3.8
At4g33970.1 68417.m04820 leucine-rich repeat family protein / ex... 28 5.0
At3g55160.1 68416.m06126 expressed protein 28 5.0
At5g60130.1 68418.m07538 transcriptional factor B3 family protei... 27 6.6
At1g75210.1 68414.m08737 5' nucleotidase family protein contains... 27 6.6
>At1g14400.2 68414.m01708 ubiquitin-conjugating enzyme 1 (UBC1) E2;
identical to gi:431259, SP:P25865
Length = 152
Score = 60.5 bits (140), Expect = 8e-10
Identities = 42/136 (30%), Positives = 69/136 (50%), Gaps = 4/136 (2%)
Query: 2 LQTENLRGIYVIPSYESSFLWYGVIFVRSGL-YEGGVFRFTITLPEKFPDDETPVLTFVS 60
LQ + GI P + LW VIF ++GG F+ ++ E +P+ + P + FVS
Sbjct: 16 LQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPN-KPPTVRFVS 74
Query: 61 NLYHPAIDASTGLLSLREVFPMWDKKRDHVWQILKYLHIIFDNLSIKVPANTEAACMYKT 120
++HP I A G + L + W D V IL + + + + PAN+EAA MY
Sbjct: 75 RMFHPNIYAD-GSICLDILQNQWSPIYD-VAAILTSIQSLLCDPNPNSPANSEAARMYSE 132
Query: 121 NRKFFMQKVRECVVTS 136
+++ + ++VR+ V S
Sbjct: 133 SKREYNRRVRDVVEQS 148
>At1g14400.1 68414.m01707 ubiquitin-conjugating enzyme 1 (UBC1) E2;
identical to gi:431259, SP:P25865
Length = 152
Score = 60.5 bits (140), Expect = 8e-10
Identities = 42/136 (30%), Positives = 69/136 (50%), Gaps = 4/136 (2%)
Query: 2 LQTENLRGIYVIPSYESSFLWYGVIFVRSGL-YEGGVFRFTITLPEKFPDDETPVLTFVS 60
LQ + GI P + LW VIF ++GG F+ ++ E +P+ + P + FVS
Sbjct: 16 LQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPN-KPPTVRFVS 74
Query: 61 NLYHPAIDASTGLLSLREVFPMWDKKRDHVWQILKYLHIIFDNLSIKVPANTEAACMYKT 120
++HP I A G + L + W D V IL + + + + PAN+EAA MY
Sbjct: 75 RMFHPNIYAD-GSICLDILQNQWSPIYD-VAAILTSIQSLLCDPNPNSPANSEAARMYSE 132
Query: 121 NRKFFMQKVRECVVTS 136
+++ + ++VR+ V S
Sbjct: 133 SKREYNRRVRDVVEQS 148
>At2g02760.1 68415.m00219 ubiquitin-conjugating enzyme 2 (UBC2) E2;
identical to gi:2689242, SP:P42745
Length = 152
Score = 60.1 bits (139), Expect = 1e-09
Identities = 42/136 (30%), Positives = 69/136 (50%), Gaps = 4/136 (2%)
Query: 2 LQTENLRGIYVIPSYESSFLWYGVIFVRSGL-YEGGVFRFTITLPEKFPDDETPVLTFVS 60
LQ + GI P + LW VIF ++GG F+ ++ E +P+ + P + FVS
Sbjct: 16 LQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPN-KPPTVRFVS 74
Query: 61 NLYHPAIDASTGLLSLREVFPMWDKKRDHVWQILKYLHIIFDNLSIKVPANTEAACMYKT 120
++HP I A G + L + W D V IL + + + + PAN+EAA M+
Sbjct: 75 RMFHPNIYAD-GSICLDILQNQWSPIYD-VAAILTSIQSLLCDPNPNSPANSEAARMFSE 132
Query: 121 NRKFFMQKVRECVVTS 136
+++ + ++VRE V S
Sbjct: 133 SKREYNRRVREVVEQS 148
>At2g46030.1 68415.m05726 ubiquitin-conjugating enzyme 6 (UBC6) E2;
identical to gi|431267, SP:P42750, PIR:S52661; contains
a ubiquitin-conjugating enzymes active site (PDOC00163)
Length = 183
Score = 56.4 bits (130), Expect = 1e-08
Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 1/100 (1%)
Query: 32 LYEGGVFRFTITLPEKFPDDETPVLTFVSNLYHPAIDASTGLLSLREVFPMWDKKRDHVW 91
LY+GGV++ + LPE +P ++P + FV+ +YHP +D S+G + L + W D +
Sbjct: 43 LYQGGVWKIKVELPEAYPY-KSPSVGFVNKIYHPNVDESSGAVCLDVINQTWSPMFDLIN 101
Query: 92 QILKYLHIIFDNLSIKVPANTEAACMYKTNRKFFMQKVRE 131
+L + + P N EAA + +R + KV+E
Sbjct: 102 VFESFLPQLLLYPNPSDPFNGEAASLLMRDRAAYELKVKE 141
>At1g63800.1 68414.m07220 ubiquitin-conjugating enzyme 5 (UBC5) E2;
identical to gi:431269, SP:P42749
Length = 185
Score = 56.0 bits (129), Expect = 2e-08
Identities = 29/103 (28%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Query: 29 RSGLYEGGVFRFTITLPEKFPDDETPVLTFVSNLYHPAIDASTGLLSLREVFPMWDKKRD 88
+ +YEGGV++ + LP+ +P ++P + F++ +YHP +D +G + L + W D
Sbjct: 40 KDSIYEGGVWKIRVELPDAYP-YKSPSVGFITKIYHPNVDEMSGSVCLDVINQTWSPMFD 98
Query: 89 HVWQILKYLHIIFDNLSIKVPANTEAACMYKTNRKFFMQKVRE 131
V +L + + P N EAA + +R + Q+V+E
Sbjct: 99 LVNVFETFLPQLLLYPNPSDPLNGEAAALMMRDRPTYEQRVKE 141
>At5g62540.1 68418.m07849 ubiquitin-conjugating enzyme 3 (UBC3) E2;
identical to gi:431261, SP:P42746
Length = 150
Score = 55.2 bits (127), Expect = 3e-08
Identities = 40/136 (29%), Positives = 67/136 (49%), Gaps = 4/136 (2%)
Query: 2 LQTENLRGIYVIPSYESSFLWYGVIFVRSGL-YEGGVFRFTITLPEKFPDDETPVLTFVS 60
LQ + GI P + W +IF ++GG F+ T+ E +P+ + P++ FVS
Sbjct: 16 LQKDPPVGISGAPQDNNIMHWNALIFGPEDTPWDGGTFKLTLHFTEDYPN-KPPIVRFVS 74
Query: 61 NLYHPAIDASTGLLSLREVFPMWDKKRDHVWQILKYLHIIFDNLSIKVPANTEAACMYKT 120
++HP I A G + L + W D V +L + + + + PAN EAA ++
Sbjct: 75 RMFHPNIYAD-GSICLDILQNQWSPIYD-VAAVLTSIQSLLCDPNPDSPANAEAARLFSE 132
Query: 121 NRKFFMQKVRECVVTS 136
N++ + +KV E V S
Sbjct: 133 NKREYNRKVIEIVEQS 148
>At5g41340.1 68418.m05024 ubiquitin-conjugating enzyme 4 (UBC4) E2;
identical to gi:431265, SP:P42748
Length = 187
Score = 55.2 bits (127), Expect = 3e-08
Identities = 29/103 (28%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Query: 29 RSGLYEGGVFRFTITLPEKFPDDETPVLTFVSNLYHPAIDASTGLLSLREVFPMWDKKRD 88
+ LY+GGV++ + LP+ +P ++P + F++ +YHP +D +G + L + W D
Sbjct: 40 KDSLYQGGVWKIRVELPDAYP-YKSPSVGFITKIYHPNVDELSGSVCLDVINQTWSPMFD 98
Query: 89 HVWQILKYLHIIFDNLSIKVPANTEAACMYKTNRKFFMQKVRE 131
V +L + + P N EAA + +R + Q+V+E
Sbjct: 99 LVNVFETFLPQLLLYPNPSDPLNGEAAALMMRDRPAYEQRVKE 141
>At3g55380.1 68416.m06151 ubiquitin-conjugating enzyme 14 (UBC14)
E2; UbcAT3; identical to gi:2129757, S46656
Length = 167
Score = 47.2 bits (107), Expect = 8e-06
Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 14/114 (12%)
Query: 32 LYEGGVFRFTITLPEKFPDDETPVLTFVSNLYHPAIDASTGLLSLREVFPMWDKKRDHV- 90
LYEGG F ++ PE +P P +TF S ++HP + S G + + + P D +
Sbjct: 49 LYEGGFFNAIMSFPENYP-VSPPTVTFTSEMWHPNV-YSDGKVCISILHPPGDDPHGYEL 106
Query: 91 ----WQILKYLH-IIFDNLSI------KVPANTEAACMYKTNRKFFMQKVRECV 133
W + + I+ +S+ + PAN EAA ++ NR F +KV CV
Sbjct: 107 ASERWTPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDNRAEFRKKVSRCV 160
>At2g32790.1 68415.m04014 ubiquitin-conjugating enzyme, putative
similar to ubiquitin conjugating enzyme from [Oryza
sativa] GI:1373001, {Arabidopsis thaliana} SP|P35134,
SP|P35131; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 177
Score = 45.6 bits (103), Expect = 2e-05
Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 4/120 (3%)
Query: 13 IPSYESSFLWYGVIFVRSGL-YEGGVFRFTITLPEKFPDDETPVLTFVSNLYHPAIDAST 71
+PS E+ F W + G YE GVF ++ +P K+P E P +TF + ++HP I +
Sbjct: 53 LPSPENIFRWEATVNGPVGCPYEKGVFTVSVHIPPKYP-YEPPKITFKTKIFHPNI-SEI 110
Query: 72 GLLSLREVFPMWDKKRDHVWQILKYLHIIFDNLSIKVPANTEAACMYKTNRKFFMQKVRE 131
G + + + W +L I+ + + + +N AA +Y+ +RK + + RE
Sbjct: 111 GEIFVDILGSRWSSALTINLVLLSICSILSNPVEPLLVSN-HAARLYQKDRKAYEKVARE 169
>At1g78870.1 68414.m09193 ubiquitin-conjugating enzyme, putative
nearly identical to ubiquitin-conjugating enzyme E2
[Catharanthus roseus] GI:5381319; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 112
Score = 44.8 bits (101), Expect = 4e-05
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 5/98 (5%)
Query: 2 LQTENLRGIYVIPSYESSFLWYGVIFV--RSGLYEGGVFRFTITLPEKFPDDETPVLTFV 59
L +E GI PS E + ++ V+ + YEGGVF+ + LPE++P P + F+
Sbjct: 17 LLSEPAPGISASPS-EDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYP-MAAPKVRFL 74
Query: 60 SNLYHPAIDASTGLLSLREVFPMWDKKRDHVWQILKYL 97
+ +YHP ID G + L + W +L+Y+
Sbjct: 75 TKIYHPNID-KLGRICLDILKDKWSPALQIRTVLLRYM 111
>At5g59300.1 68418.m07430 ubiquitin-conjugating enzyme 7 (UBC7) E2;
identical to gi:992703, SP:P42747
Length = 198
Score = 44.0 bits (99), Expect = 7e-05
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 14/114 (12%)
Query: 32 LYEGGVFRFTITLPEKFPDDETPVLTFVSNLYHPAIDASTGLLSLREVFPMWDKKRDH-- 89
LYEGG F +T P+ +P + P + F S+++HP + S G + + + P D +
Sbjct: 80 LYEGGFFNAIMTFPQNYP-NSPPTVRFTSDMWHPNV-YSDGRVCISILHPPGDDPSGYEL 137
Query: 90 ----------VWQILKYLHIIFDNLSIKVPANTEAACMYKTNRKFFMQKVRECV 133
V I+ + + + + PAN EAA ++ R F +KV CV
Sbjct: 138 ASERWTPVHTVESIMLSIISMLSGPNDESPANVEAAKEWRDKRDEFKKKVSRCV 191
>At5g50870.1 68418.m06304 ubiquitin-conjugating enzyme, putative
strong similarity to ubiquitin conjugating enzyme
[Lycopersicon esculentum] GI:886679; contains Pfam
profile PF00179: Ubiquitin-conjugating enzyme
Length = 192
Score = 44.0 bits (99), Expect = 7e-05
Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 3/129 (2%)
Query: 3 QTENLRGIYVIPSYESSFLWYGVIFVRSGL-YEGGVFRFTITLPEKFPDDETPVLTFVSN 61
+ ++ GI V P ++ G I G YEGG F+ IT+P+ +P E P + F +
Sbjct: 16 RNQDSSGIRVCPKSDNLTRLTGTIPGPIGTPYEGGTFQIDITMPDGYP-FEPPKMQFSTK 74
Query: 62 LYHPAIDASTGLLSLREVFPMWDKKRDHVWQILKYLHIIFDNLSIKVPANTEAACMYKTN 121
++HP I + +G + L + W + L + + K P + A Y N
Sbjct: 75 VWHPNISSQSGAICLDILKDQWSPALT-LKTALVSIQALLSAPEPKDPQDAVVAEQYMKN 133
Query: 122 RKFFMQKVR 130
+ F+ R
Sbjct: 134 YQVFVSTAR 142
>At3g24515.1 68416.m03077 ubiquitin-conjugating enzyme, putative
similar to Ubiquitin-conjugating enzyme E2
(Ubiquitin-protein ligase) (Ubiquitin carrier protein)
from {Xenopus laevis} SP|P51669, {Schizosaccharomyces
pombe} SP|P46595, {Caenorhabditis elegans} SP|P35129;
contains Pfam profile PF00179: Ubiquitin-conjugating
enzyme
Length = 409
Score = 44.0 bits (99), Expect = 7e-05
Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 32 LYEGGVFRFTITLPEKFPDDETPVLTFVSNLYHPAIDASTGL-LSLREVFP--MWDKKRD 88
+Y G+F I +PE++P + P+++F + +YHP ID S + L + + P W
Sbjct: 58 VYANGIFNLKIQIPERYPF-QPPIVSFATPIYHPNIDNSGRICLDILNLPPKGAWQPSL- 115
Query: 89 HVWQILKYLHIIFDNLSIKVPANTEAACMYKTNRKFFMQKVRE 131
++ +L + ++ + E + YK NR+ F K RE
Sbjct: 116 NISTVLTSMRLLLSEPNPDDGLMCEVSREYKYNRQTFDYKARE 158
>At1g78870.2 68414.m09194 ubiquitin-conjugating enzyme, putative
nearly identical to ubiquitin-conjugating enzyme E2
[Catharanthus roseus] GI:5381319; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 153
Score = 44.0 bits (99), Expect = 7e-05
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 2 LQTENLRGIYVIPSYESSFLWYGVIFV--RSGLYEGGVFRFTITLPEKFPDDETPVLTFV 59
L +E GI PS E + ++ V+ + YEGGVF+ + LPE++P P + F+
Sbjct: 17 LLSEPAPGISASPS-EDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYP-MAAPKVRFL 74
Query: 60 SNLYHPAID 68
+ +YHP ID
Sbjct: 75 TKIYHPNID 83
>At1g36340.1 68414.m04516 ubiquitin-conjugating enzyme family
protein similar to Ubiquitin-conjugating enzyme E2-16
kDa (EC 6.3.2.19) (Ubiquitin-protein ligase) (Ubiquitin
carrier protein) from {Schizosaccharomyces pombe}
SP|P46595, {Caenorhabditis elegans} SP|P35129; contains
Pfam profile PF00179: Ubiquitin-conjugating enzyme
Length = 154
Score = 44.0 bits (99), Expect = 7e-05
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
Query: 22 WYGVIFVRSGL-YEGGVFRFTITLPEKFPDDETPVLTFVSNLYHPAIDASTGLLSLREVF 80
W VI G YEGG+F +I P +P + P TF + +YHP I+ G + + +
Sbjct: 39 WTAVIRGPDGTPYEGGMFNLSIKFPTDYP-FKPPKFTFKTPIYHPNIN-DEGSICMNILK 96
Query: 81 PMWDKKRDHVWQILKYLHIIFDNLSIKVPANTEAACMYKTNRKFFMQKVRE 131
W V ++L + ++ + + P E ++K NR F Q+ RE
Sbjct: 97 DKWTPAL-MVEKVLLSILLLLEKPNPDDPLVPEIGQLFKNNRFQFDQRARE 146
>At1g16890.2 68414.m02044 ubiquitin-conjugating enzyme, putative
nearly identical to ubiquitin-conjugating enzyme E2
[Catharanthus roseus] GI:5381319; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 153
Score = 44.0 bits (99), Expect = 7e-05
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 2 LQTENLRGIYVIPSYESSFLWYGVIFV--RSGLYEGGVFRFTITLPEKFPDDETPVLTFV 59
L +E GI PS E + ++ V+ + YEGGVF+ + LPE++P P + F+
Sbjct: 17 LLSEPAPGISASPS-EENMRYFNVMILGPTQSPYEGGVFKLELFLPEEYP-MAAPKVRFL 74
Query: 60 SNLYHPAID 68
+ +YHP ID
Sbjct: 75 TKIYHPNID 83
>At3g13550.1 68416.m01703 ubiquitin-conjugating enzyme (COP10)
identical to ubiquitin-conjugating enzyme COP10
[Arabidopsis thaliana] GI:20065779; contains Pfam
profile PF00179: Ubiquitin-conjugating enzyme
Length = 182
Score = 43.6 bits (98), Expect = 9e-05
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
Query: 14 PSYESSFLWYGVIFVRSGL-YEGGVFRFTITLPEKFPDDETPVLTFVSNLYHPAIDASTG 72
P ++ + W I SG YEGG+F I P +P + P L F + +YH +D + G
Sbjct: 60 PKGDNLYHWIATIIGPSGTPYEGGIFFLDIIFPSDYP-FKPPKLVFKTRIYHCNVD-TAG 117
Query: 73 LLSLREVFPMWDKKRDHVWQILKYLHIIFDNLSIKVPANTEAACMYKTNRK 123
LS+ + W + ++L+ + IF PA A +Y T+R+
Sbjct: 118 DLSVNILRDSWSPALT-ITKVLQAIRSIFLKPEPYSPALPVIARLYLTDRE 167
>At5g41700.4 68418.m05071 ubiquitin-conjugating enzyme 8 (UBC8) E2;
identical to gi:297882, SP:P35131
Length = 149
Score = 41.9 bits (94), Expect = 3e-04
Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 4/114 (3%)
Query: 10 IYVIPSYESSFLWYGVIF-VRSGLYEGGVFRFTITLPEKFPDDETPVLTFVSNLYHPAID 68
I+ P E F W I Y GGVF TI P +P + P + F + ++HP I+
Sbjct: 22 IFAGPVAEDMFHWQATIMGPAESPYSGGVFLVTIHFPPDYP-FKPPKVAFRTKVFHPNIN 80
Query: 69 ASTGLLSLREVFPMWDKKRDHVWQILKYLHIIFDNLSIKVPANTEAACMYKTNR 122
S G + L + W + ++L + + + + P E A MYKT+R
Sbjct: 81 -SNGSICLDILKEQWSPALT-ISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDR 132
>At3g08690.1 68416.m01010 ubiquitin-conjugating enzyme 11 (UBC11)
E2; identical to gi:12643427, SP:P35134
Length = 148
Score = 41.5 bits (93), Expect = 4e-04
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 4/118 (3%)
Query: 14 PSYESSFLWYGVIF-VRSGLYEGGVFRFTITLPEKFPDDETPVLTFVSNLYHPAIDASTG 72
P E F W I Y GGVF +I P +P + P ++F + +YHP I+ S G
Sbjct: 25 PVAEDMFHWQATIMGPPESPYAGGVFLVSIHFPPDYP-FKPPKVSFKTKVYHPNIN-SNG 82
Query: 73 LLSLREVFPMWDKKRDHVWQILKYLHIIFDNLSIKVPANTEAACMYKTNRKFFMQKVR 130
+ L + W + ++L + + + + P E A MYKT+R + R
Sbjct: 83 SICLDILKEQWSPALT-ISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYESTAR 139
>At1g64230.1 68414.m07276 ubiquitin-conjugating enzyme, putative
identical or nearly so to Ubiquitin-conjugating enzymes
SP|P35132, SP|P35131, SP|P35133 from {Arabidopsis
thaliana}; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 148
Score = 41.5 bits (93), Expect = 4e-04
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 4/118 (3%)
Query: 14 PSYESSFLWYGVIFVRSGL-YEGGVFRFTITLPEKFPDDETPVLTFVSNLYHPAIDASTG 72
P E F W I S Y GGVF TI P +P + P + F + ++HP ++ S G
Sbjct: 25 PVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYP-FKPPKVAFRTKVFHPNVN-SNG 82
Query: 73 LLSLREVFPMWDKKRDHVWQILKYLHIIFDNLSIKVPANTEAACMYKTNRKFFMQKVR 130
+ L + W + ++L + + + + P E A MYKT+R + R
Sbjct: 83 SICLDILKEQWSPALT-ISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTAR 139
>At4g27960.2 68417.m04012 ubiquitin-conjugating enzyme E2-17 kDa 9
(UBC9) E2; identical to gi:297883, SP:P35132; identical
to cDNA UBC9 for ubiquitin conjugating enzyme homolog
GI:297883
Length = 178
Score = 41.1 bits (92), Expect = 5e-04
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 4/118 (3%)
Query: 14 PSYESSFLWYGVIFVRSGL-YEGGVFRFTITLPEKFPDDETPVLTFVSNLYHPAIDASTG 72
P E F W I S Y GGVF TI P +P + P + F + ++HP I+ S G
Sbjct: 55 PVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYP-FKPPKVAFRTKVFHPNIN-SNG 112
Query: 73 LLSLREVFPMWDKKRDHVWQILKYLHIIFDNLSIKVPANTEAACMYKTNRKFFMQKVR 130
+ L + W + ++L + + + + P E A MYKT++ + R
Sbjct: 113 SICLDILKEQWSPALT-ISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTAR 169
>At4g27960.1 68417.m04011 ubiquitin-conjugating enzyme E2-17 kDa 9
(UBC9) E2; identical to gi:297883, SP:P35132; identical
to cDNA UBC9 for ubiquitin conjugating enzyme homolog
GI:297883
Length = 148
Score = 41.1 bits (92), Expect = 5e-04
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 4/118 (3%)
Query: 14 PSYESSFLWYGVIFVRSGL-YEGGVFRFTITLPEKFPDDETPVLTFVSNLYHPAIDASTG 72
P E F W I S Y GGVF TI P +P + P + F + ++HP I+ S G
Sbjct: 25 PVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYP-FKPPKVAFRTKVFHPNIN-SNG 82
Query: 73 LLSLREVFPMWDKKRDHVWQILKYLHIIFDNLSIKVPANTEAACMYKTNRKFFMQKVR 130
+ L + W + ++L + + + + P E A MYKT++ + R
Sbjct: 83 SICLDILKEQWSPALT-ISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTAR 139
>At1g16890.1 68414.m02043 ubiquitin-conjugating enzyme, putative
nearly identical to ubiquitin-conjugating enzyme E2
[Catharanthus roseus] GI:5381319; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 120
Score = 41.1 bits (92), Expect = 5e-04
Identities = 17/36 (47%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 33 YEGGVFRFTITLPEKFPDDETPVLTFVSNLYHPAID 68
YEGGVF+ + LPE++P P + F++ +YHP ID
Sbjct: 16 YEGGVFKLELFLPEEYP-MAAPKVRFLTKIYHPNID 50
>At5g53300.2 68418.m06625 ubiquitin-conjugating enzyme 10 (UBC10)
E2; identical to gi:297877, SP:P35133
Length = 148
Score = 40.7 bits (91), Expect = 7e-04
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 4/118 (3%)
Query: 14 PSYESSFLWYGVIFVRS-GLYEGGVFRFTITLPEKFPDDETPVLTFVSNLYHPAIDASTG 72
P E F W I S Y GGVF TI P +P + P + F + ++HP I+ S G
Sbjct: 25 PVAEDMFHWQATIMGPSESPYAGGVFLVTIHFPPDYP-FKPPKVAFRTKVFHPNIN-SNG 82
Query: 73 LLSLREVFPMWDKKRDHVWQILKYLHIIFDNLSIKVPANTEAACMYKTNRKFFMQKVR 130
+ L + W + ++L + + + + P E A MYKT++ + R
Sbjct: 83 SICLDILKEQWSPALT-ISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTAR 139
>At5g53300.1 68418.m06624 ubiquitin-conjugating enzyme 10 (UBC10)
E2; identical to gi:297877, SP:P35133
Length = 148
Score = 40.7 bits (91), Expect = 7e-04
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 4/118 (3%)
Query: 14 PSYESSFLWYGVIFVRS-GLYEGGVFRFTITLPEKFPDDETPVLTFVSNLYHPAIDASTG 72
P E F W I S Y GGVF TI P +P + P + F + ++HP I+ S G
Sbjct: 25 PVAEDMFHWQATIMGPSESPYAGGVFLVTIHFPPDYP-FKPPKVAFRTKVFHPNIN-SNG 82
Query: 73 LLSLREVFPMWDKKRDHVWQILKYLHIIFDNLSIKVPANTEAACMYKTNRKFFMQKVR 130
+ L + W + ++L + + + + P E A MYKT++ + R
Sbjct: 83 SICLDILKEQWSPALT-ISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTAR 139
>At5g41700.2 68418.m05070 ubiquitin-conjugating enzyme 8 (UBC8) E2;
identical to gi:297882, SP:P35131
Length = 148
Score = 40.7 bits (91), Expect = 7e-04
Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 4/110 (3%)
Query: 14 PSYESSFLWYGVIF-VRSGLYEGGVFRFTITLPEKFPDDETPVLTFVSNLYHPAIDASTG 72
P E F W I Y GGVF TI P +P + P + F + ++HP I+ S G
Sbjct: 25 PVAEDMFHWQATIMGPAESPYSGGVFLVTIHFPPDYP-FKPPKVAFRTKVFHPNIN-SNG 82
Query: 73 LLSLREVFPMWDKKRDHVWQILKYLHIIFDNLSIKVPANTEAACMYKTNR 122
+ L + W + ++L + + + + P E A MYKT+R
Sbjct: 83 SICLDILKEQWSPALT-ISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDR 131
>At5g41700.1 68418.m05069 ubiquitin-conjugating enzyme 8 (UBC8) E2;
identical to gi:297882, SP:P35131
Length = 148
Score = 40.7 bits (91), Expect = 7e-04
Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 4/110 (3%)
Query: 14 PSYESSFLWYGVIF-VRSGLYEGGVFRFTITLPEKFPDDETPVLTFVSNLYHPAIDASTG 72
P E F W I Y GGVF TI P +P + P + F + ++HP I+ S G
Sbjct: 25 PVAEDMFHWQATIMGPAESPYSGGVFLVTIHFPPDYP-FKPPKVAFRTKVFHPNIN-SNG 82
Query: 73 LLSLREVFPMWDKKRDHVWQILKYLHIIFDNLSIKVPANTEAACMYKTNR 122
+ L + W + ++L + + + + P E A MYKT+R
Sbjct: 83 SICLDILKEQWSPALT-ISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDR 131
>At5g25760.1 68418.m03057 ubiquitin-conjugating enzyme, putative
similar to SP|O60015 Ubiquitin-conjugating enzyme E2-21
kDa (EC 6.3.2.19) (Ubiquitin-protein ligase) (Ubiquitin
carrier protein) {Pichia angusta}; contains Pfam
profile PF00179: Ubiquitin-conjugating enzyme
Length = 157
Score = 39.9 bits (89), Expect = 0.001
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 33 YEGGVFRFTITLPEKFPDDETPVLTFVSNLYHPAIDASTGLLSLREVFPMW 83
YEGGVF+ ++PE +P + P + F++ ++HP + TG + L + W
Sbjct: 49 YEGGVFQLAFSVPEPYP-LQPPQVRFLTKIFHPNVHFKTGEICLDILKNAW 98
>At3g46460.1 68416.m05037 ubiquitin-conjugating enzyme 13 (UBC13)
E2; identical to gi:992706
Length = 166
Score = 39.5 bits (88), Expect = 0.002
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 14/114 (12%)
Query: 32 LYEGGVFRFTITLPEKFPDDETPVLTFVSNLYHPAIDASTGLLSLREVFPMWDKKRDH-- 89
LYEGG F ++ P+ +P+ P + F S+++HP + G + + + P D +
Sbjct: 48 LYEGGFFYAIMSFPQNYPNSP-PTVRFTSDIWHPNVYPD-GRVCISILHPPGDDPSGYEL 105
Query: 90 ----------VWQILKYLHIIFDNLSIKVPANTEAACMYKTNRKFFMQKVRECV 133
V I+ + + + + PAN EAA ++ R F +KV CV
Sbjct: 106 ASERWTPVHTVESIMLSIISMLSGPNDESPANVEAAKEWREKRDEFKKKVSRCV 159
>At2g18600.1 68415.m02166 RUB1-conjugating enzyme, putative strong
similarity to gi:6635457 RUB1 conjugating enzyme
[Arabidopsis thaliana]; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 185
Score = 38.3 bits (85), Expect = 0.004
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 3/104 (2%)
Query: 31 GLYEGGVFRFTITLPEKFPDDETPVLTFVSNLYHPAIDASTGLLSLREVFPMWDKKRDHV 90
G Y G F F+ + +P E P + + +YHP ID G + L + W K ++
Sbjct: 72 GYYLSGNFVFSFQVSNMYPH-EAPKVKCKTKVYHPNIDLE-GNVCLNILREDW-KPVLNI 128
Query: 91 WQILKYLHIIFDNLSIKVPANTEAACMYKTNRKFFMQKVRECVV 134
++ L +F + + P N EAA + + N K F VR ++
Sbjct: 129 NTVIYGLFHLFTEPNYEDPLNHEAAAVLRDNPKTFEYNVRRAMM 172
>At2g16740.1 68415.m01920 ubiquitin-conjugating enzyme, putative
strong similarity to SP|P35133 Ubiquitin-conjugating
enzyme E2-17 kDa 10 (EC 6.3.2.19) (Ubiquitin- protein
ligase 10) (Ubiquitin carrier protein 10) {Arabidopsis
thaliana}; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 148
Score = 36.7 bits (81), Expect = 0.011
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 4/110 (3%)
Query: 14 PSYESSFLWYGVIF-VRSGLYEGGVFRFTITLPEKFPDDETPVLTFVSNLYHPAIDASTG 72
P+ E F W I Y GGVF I P +P + P + F + ++HP I+ S G
Sbjct: 25 PTGEDMFHWQATIMGPNESPYSGGVFLVNIHFPPDYP-FKPPKVVFRTKVFHPNIN-SNG 82
Query: 73 LLSLREVFPMWDKKRDHVWQILKYLHIIFDNLSIKVPANTEAACMYKTNR 122
+ L + W + ++L + + + + P E A +YKT++
Sbjct: 83 NICLDILKDQWSPALT-ISKVLLSICSLLTDPNPDDPLVPEIAHIYKTDK 131
>At5g41700.3 68418.m05068 ubiquitin-conjugating enzyme 8 (UBC8)
E2; identical to gi:297882, SP:P35131
Length = 145
Score = 35.5 bits (78), Expect = 0.025
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 14 PSYESSFLWYGVIF-VRSGLYEGGVFRFTITLPEKFPDDETPVLTFVSNLYHPAIDASTG 72
P E F W I Y GGVF TI P +P + P + F + ++HP I+ S G
Sbjct: 25 PVAEDMFHWQATIMGPAESPYSGGVFLVTIHFPPDYP-FKPPKVAFRTKVFHPNIN-SNG 82
Query: 73 LLSLREVFPMW 83
+ L + W
Sbjct: 83 SICLDILKEQW 93
>At3g08700.1 68416.m01011 ubiquitin-conjugating enzyme, putative
strong similar to ubiquitin-conjugating enzymes E2-17
from [Arabidopsis thaliana] SP|P35134, SP|P35132,
SP|P35133; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 149
Score = 35.5 bits (78), Expect = 0.025
Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 4/107 (3%)
Query: 17 ESSFLWYGVIF-VRSGLYEGGVFRFTITLPEKFPDDETPVLTFVSNLYHPAIDASTGLLS 75
E F W I Y GGVF +I +P + P + F + +YHP ID S G +
Sbjct: 29 EDIFHWQATIMGPHDSPYSGGVFTVSIDFSSDYPF-KPPKVNFKTKVYHPNID-SKGSIC 86
Query: 76 LREVFPMWDKKRDHVWQILKYLHIIFDNLSIKVPANTEAACMYKTNR 122
L + W +L ++ D + P E A +YK ++
Sbjct: 87 LDILKEQWSPAPTTSKVLLSICSLLTDP-NPNDPLVPEIAHLYKVDK 132
>At5g05080.1 68418.m00539 ubiquitin-conjugating enzyme, putative
similar to SP|Q16763 Ubiquitin-conjugating enzyme E2-24
kDa (EC 6.3.2.19) (Ubiquitin- protein ligase) (Ubiquitin
carrier protein) {Homo sapiens}; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 251
Score = 32.3 bits (70), Expect = 0.23
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 33 YEGGVFRFTITLPEKFPDDETPVLTFVSNLYHPAIDASTGLLSLREVFPMWDKKRD--HV 90
YE G+FR + L FP P F++ ++HP + AS G + + + W+ HV
Sbjct: 54 YENGLFRMKLALSHDFP-HSPPKGYFMTKIFHPNV-ASNGEICVNTLKKDWNPSLGLRHV 111
Query: 91 WQILKYLHI 99
+++ L I
Sbjct: 112 LSVVRCLLI 120
>At5g05680.1 68418.m00625 nuclear pore complex protein-related
contains weak similarity to Nuclear pore complex protein
Nup88 (Nucleoporin Nup88) (88 kDa nuclear pore complex
protein) (Swiss-Prot:Q99567) [Homo sapiens]
Length = 810
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/63 (23%), Positives = 28/63 (44%)
Query: 26 IFVRSGLYEGGVFRFTITLPEKFPDDETPVLTFVSNLYHPAIDASTGLLSLREVFPMWDK 85
+F R+ + E V +++ + +T + +HP D G+LS VF ++D
Sbjct: 133 LFGRASVIEDNVICRVVSIGSEIYTSSDSAITLLQASWHPDSDTHLGILSSDAVFRLFDL 192
Query: 86 KRD 88
D
Sbjct: 193 SSD 195
>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 727
Score = 28.7 bits (61), Expect = 2.8
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 39 RFTITLPEKFPDDETPVLTFVSNLYHPAIDASTG-LLSLREV 79
RFT T+P+ + V+TF N + I S G + +L E+
Sbjct: 214 RFTSTIPDSLGESSASVVTFAHNKFSGCIPRSIGNMKNLNEI 255
>At5g17790.1 68418.m02086 zinc finger (Ran-binding) family protein
contains Pfam domain, PF00641: Zn-finger in Ran binding
protein and others
Length = 758
Score = 28.3 bits (60), Expect = 3.8
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 7/108 (6%)
Query: 97 LHIIFD-NLSIKVPANTEAACMYKTNRKFFMQKVRECVVTSIDHIYDDPPTEDKHYITFK 155
LH + D +I + E M K +F + + ++ +TS Y P ED ++ F
Sbjct: 555 LHNVSDLESAIPQEISPEKMPMRKGENRFVVSRKKDRSLTS--PAYKRP--EDSDFVPFV 610
Query: 156 PYDPDIHEKAKDIMLTAFKPTEGATQGMSW-VQQGCYQP-FSKEETMS 201
P+ PD K K + AT+ +S VQQ +P +K +T++
Sbjct: 611 PFPPDYFAKEKQPKESIDTLPAPATENVSQVVQQEPREPSINKSDTVA 658
>At3g63210.1 68416.m07101 expressed protein identical to
senescence-associated protein SAG102 (GI::22331931)
[Arabidopsis thaliana] (unpublished); contains Pfam
profile PF04570: Protein of unknown function (DUF581)
Length = 263
Score = 28.3 bits (60), Expect = 3.8
Identities = 20/95 (21%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Query: 54 PVLTFVSNLYHPAIDASTGLLSLREVFPMWDKKRDHVWQILKYLHIIFDNLSIKVPANTE 113
PV F + +P S + L ++ D RDH + + + + L +++P++ +
Sbjct: 83 PVSYFEPTIPNPQRFHSPDVFGLADLVKDGDSNRDHSRKPVNKMVLFGSKLRVQIPSSAD 142
Query: 114 AACMYKTNRKFFMQKVRECVVTSIDHIYDDPPTED 148
KT ++ ++ CV T + + + TED
Sbjct: 143 FGT--KTGIRYPPCQLSPCVQTKVLAVSEIDQTED 175
>At1g31120.1 68414.m03808 potassium transporter family protein
similar to HAK2 [Hordeum vulgare] GI:7108599, potassium
transporter [Arabidopsis thaliana]
gi|2654088|gb|AAB87687; KUP/HAK/KT Transporter family
member, PMID:11500563; contains Pfam profile PF02705: K+
potassium transporter
Length = 796
Score = 28.3 bits (60), Expect = 3.8
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
Query: 90 VWQILKYLHIIFDNLSIKVPANTEAACMYKTNRKFFMQKVRECVVTSIDHIYDDPPTEDK 149
VW+ L ++F LS+ V +A ++K N+ ++ V I +++
Sbjct: 473 VWRCHWVLVLLFTLLSLVVECTYFSAVLFKVNQGGWVPLVIAAAFLVIMYVW-------- 524
Query: 150 HYITFKPYDPDIHEKAKDIMLTAFKPTEG 178
HY T K Y+ ++H K + P+ G
Sbjct: 525 HYGTLKRYEFEMHSKVSMAWILGLGPSLG 553
>At4g33970.1 68417.m04820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 699
Score = 27.9 bits (59), Expect = 5.0
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 39 RFTITLPEKFPDDETPVLTFVSNLYHPAIDASTG-LLSLREV 79
RFT +PE + V+TF +N + I S G + +L E+
Sbjct: 240 RFTSVIPESLGESPASVVTFANNKFTGCIPKSIGNMKNLNEI 281
>At3g55160.1 68416.m06126 expressed protein
Length = 2149
Score = 27.9 bits (59), Expect = 5.0
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 52 ETPVLTFVSNLYHPAIDASTGLLSLREVFPMWDKKRDHVWQILKYLHIIFDNL 104
+T +LT +S Y P D+ ++ R + +W+ D + Q +K +H++FD L
Sbjct: 386 KTSMLTDLSEGYDPMPDS----MAARVLRIIWNNLEDPLSQTVKQVHLMFDLL 434
>At5g60130.1 68418.m07538 transcriptional factor B3 family protein
contains Pfam profile PF02362: B3 DNA binding domain
Length = 300
Score = 27.5 bits (58), Expect = 6.6
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 137 IDHIYDDPPTEDKHYITFKPYDPDIHEKAKD 167
+D++ DD P ED Y+ + +D H KA D
Sbjct: 157 VDNVADDVPVEDDDYV--EAFDSRDHAKADD 185
>At1g75210.1 68414.m08737 5' nucleotidase family protein contains
Pfam profile: PF05761 5' nucleotidase family
Length = 642
Score = 27.5 bits (58), Expect = 6.6
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 147 EDK-HYITFKPYDPDIHEKAKDIMLTAFKPTEG----ATQGMSWVQQGCYQPFSK 196
EDK H++ + DI+E K ML+A K E Q Q+ C+Q F K
Sbjct: 530 EDKIHHLNWSLKFEDINENNKHEMLSALKDLESKRDKVRQSHQQAQRECHQKFHK 584
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.322 0.138 0.434
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,241,416
Number of Sequences: 28952
Number of extensions: 225817
Number of successful extensions: 462
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 428
Number of HSP's gapped (non-prelim): 46
length of query: 201
length of database: 12,070,560
effective HSP length: 78
effective length of query: 123
effective length of database: 9,812,304
effective search space: 1206913392
effective search space used: 1206913392
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)
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