Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001342-TA|BGIBMGA001342-PA|IPR003417|Core binding
factor, beta subunit
         (230 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35520| Best HMM Match : CBF_beta (HMM E-Value=0)                   185   2e-47
SB_40713| Best HMM Match : No HMM Matches (HMM E-Value=.)              60   2e-09
SB_2992| Best HMM Match : No HMM Matches (HMM E-Value=.)               35   0.049
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)                   30   1.4  
SB_26854| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0)                 29   2.4  
SB_9921| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.2  
SB_23516| Best HMM Match : Glyco_tran_28_C (HMM E-Value=0.004)         29   3.2  
SB_52374| Best HMM Match : GATase_2 (HMM E-Value=0)                    29   4.3  
SB_6211| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.3  
SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_55427| Best HMM Match : E-MAP-115 (HMM E-Value=0.077)               28   5.6  
SB_18026| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_18588| Best HMM Match : zf-C2H2 (HMM E-Value=0.0061)                28   5.6  
SB_5496| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.4  
SB_2086| Best HMM Match : 7tm_1 (HMM E-Value=9.1e-07)                  28   7.4  
SB_45235| Best HMM Match : CBM_20 (HMM E-Value=0.91)                   27   9.8  
SB_10355| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0037)         27   9.8  
SB_23305| Best HMM Match : RVT_1 (HMM E-Value=0.0013)                  27   9.8  
SB_2495| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.2e-11)         27   9.8  

>SB_35520| Best HMM Match : CBF_beta (HMM E-Value=0)
          Length = 174

 Score =  185 bits (451), Expect = 2e-47
 Identities = 84/172 (48%), Positives = 120/172 (69%), Gaps = 3/172 (1%)

Query: 28  MPRVVPDQKAKFESDDLFKRLSRESEVRYTGYRDRPPEERQMRFMSGCREGHTEIAFTGT 87
           MPRVVP+QK KFE+D++F++L+RESE++YTGYRDR  EER +RF +  R+G + +A+  +
Sbjct: 1   MPRVVPEQKQKFENDEMFRKLARESEIKYTGYRDRSHEERVVRFQTEIRDGQSNVAYVAS 60

Query: 88  GTNLQLVFDHSP---YNNRGCDFQKENGKAHIVSRFIMNGVCVRWRGWIDLERLDGAGCL 144
           GTNL L F  +      +   DF +E GK HI S FI+NGVC+ ++GWIDL+RLDG G +
Sbjct: 61  GTNLTLHFPKAEDGFIRSEFLDFDREPGKVHIKSHFILNGVCIIFKGWIDLQRLDGIGYI 120

Query: 145 ELDEERAAIEDAALRDQIERYNQRLRDFEDKQRAYREHGEELRSHSHVHAQR 196
           E DEE+A  ED  +R+ +E+  QRL +FE++QR +RE  +   S +  H  R
Sbjct: 121 EYDEEKARKEDKIMRETLEQAKQRLAEFEERQRQWREEQQRKESEASTHHHR 172


>SB_40713| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 39

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 24/37 (64%), Positives = 31/37 (83%)

Query: 115 HIVSRFIMNGVCVRWRGWIDLERLDGAGCLELDEERA 151
           HI S FI+NGVC+ ++GWIDL+RLDG G +E DEE+A
Sbjct: 2   HIKSHFILNGVCIIFKGWIDLQRLDGIGYIEYDEEKA 38


>SB_2992| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 41

 Score = 35.1 bits (77), Expect = 0.049
 Identities = 14/37 (37%), Positives = 24/37 (64%)

Query: 154 EDAALRDQIERYNQRLRDFEDKQRAYREHGEELRSHS 190
           ED  +R+ +E+  QRL +FE++QR +RE  +   S +
Sbjct: 2   EDKIMRETLEQAKQRLAEFEERQRQWREEQQRKESEA 38


>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
          Length = 5087

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 4/93 (4%)

Query: 96   DHSPYNNRGCDFQKENGKAHIVSRFIMNGVCVRWRGWIDLERLDGAGCLELDEERAAIED 155
            +H  +     D   E+    I++   +  V V+    ++ ER DG  C E+DEE+   E+
Sbjct: 2855 EHETHQKDSEDEHSEDEPGVIITGVFLEEVEVK--RLLEGEREDGPSCEEVDEEKDISEE 2912

Query: 156  AALRD-QIERYNQ-RLRDFEDKQRAYREHGEEL 186
              L + +++R  +    D ED       + EE+
Sbjct: 2913 ELLEEVEVQRVEEGASHDLEDVPALKESYEEEV 2945


>SB_26854| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 97  HSPYNNRGCDFQKENGKAHIVS--RFIMNGVCVRWRGWIDLE 136
           H PY +R      E G  H+V+  +F ++G  + W   ID++
Sbjct: 39  HLPYKSRWLYVGTEKGNVHVVNIEKFELSGYTINWNKAIDIK 80


>SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
          Length = 897

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 8/69 (11%)

Query: 21  KPRF----IFKMPRVVPDQKAKFESDDLFKRLSRESEVRYTGYRDRPPEERQMRFMSGCR 76
           +PRF       +PR+    +  FE   +FK  S +  + Y G +D+    R+     G R
Sbjct: 315 QPRFKGTSYMSLPRLPRSARTSFELSIMFKASSGDGLLLYGGRKDK----RKDFLALGLR 370

Query: 77  EGHTEIAFT 85
            GH E  F+
Sbjct: 371 NGHVEFRFS 379


>SB_9921| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 530

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 143 CLELDEERAAIEDAALRDQIERYNQRLRDF 172
           CL  +EE A    A  R  +ER+N+RL+ F
Sbjct: 479 CLTKEEELATKRIAKARIHVERFNERLKKF 508


>SB_23516| Best HMM Match : Glyco_tran_28_C (HMM E-Value=0.004)
          Length = 969

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/35 (40%), Positives = 21/35 (60%)

Query: 147 DEERAAIEDAALRDQIERYNQRLRDFEDKQRAYRE 181
           DEE    ED   R+ I+RY+Q+L D + K+   R+
Sbjct: 928 DEESGEDEDVLSRNAIKRYSQQLVDSKTKKHKTRK 962


>SB_52374| Best HMM Match : GATase_2 (HMM E-Value=0)
          Length = 1075

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 2/53 (3%)

Query: 36  KAKFESDDLFKRLSRESEVRYTGYRDRPPEERQM-RFMSGCREGHTEIAFTGT 87
           KAK E  D+F +++ E E++  G+R+ P ++  + +   GC+    ++  T +
Sbjct: 431 KAK-EGKDMFTKIAEEYEIQVLGWREIPYDDTSLGKTSKGCQPYMEQVFVTSS 482


>SB_6211| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 490

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)

Query: 159 RDQIERYNQRLRDFEDKQRAYREHGEELRSHSHVHA 194
           R  +E+ N  L+D +D  RAY    E+++S    HA
Sbjct: 159 RKFLEKVNASLKDLQDVARAYEAVEEQMKSLESSHA 194


>SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2193

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 4/57 (7%)

Query: 144 LELDEERAAIEDAALRDQIERYNQRLRDFEDK----QRAYREHGEELRSHSHVHAQR 196
           LE   E  A+E  +L++Q+++ N+R+ + +D+     ++  EH   + +H+    QR
Sbjct: 499 LENQTEEDAVEKKSLKNQLDKVNKRVTEHQDELMNLDQSLVEHKIAVDAHTKEKTQR 555


>SB_55427| Best HMM Match : E-MAP-115 (HMM E-Value=0.077)
          Length = 599

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 142 GCLELDEERAAIEDAALRDQIERYNQRLRDFEDKQRAYREHGEELRSHSHVHAQR 196
           G LEL++ R  ++D   R++ ER  +   + E +QRA  E   E R  + +  QR
Sbjct: 102 GRLELEKRRQDLQDKLKREKEEREAKERAEEERRQRAKME--AEQRRQAELEKQR 154


>SB_18026| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 621

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 4/64 (6%)

Query: 13  FDSIYEQPKPRFIFKMPRVVPDQ--KAKFESDDLFKRLSRESEVRYTGYRDRPPEERQMR 70
           F+ +  QP+P    K   + PD   + +F S    +  SR    R  G R R P ER+ +
Sbjct: 254 FEEMLRQPQPLMATKP--IAPDDSGRGQFASAKRSRDRSRSPHSRERGQRGREPRERERQ 311

Query: 71  FMSG 74
              G
Sbjct: 312 RARG 315


>SB_18588| Best HMM Match : zf-C2H2 (HMM E-Value=0.0061)
          Length = 503

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/48 (25%), Positives = 30/48 (62%), Gaps = 5/48 (10%)

Query: 145 ELDEERAAIED-----AALRDQIERYNQRLRDFEDKQRAYREHGEELR 187
           EL++  A++++      AL+D++E+ N + +  +D+Q+   +  E++R
Sbjct: 125 ELNDVNASLKEERWYSTALKDEVEKLNNQNKALQDQQKQVEQEKEQMR 172


>SB_5496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1352

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 15  SIYEQPKPRFIFKMPRVVPDQKAKFESDDLFKRLSRESEVRYTGYRDRPPEERQMRFMSG 74
           SI + P P   F +    P Q+A+ E        S++SE   TGY       R +RF   
Sbjct: 511 SIDDSPVPFDTFALDDEEP-QEAQQEKASEAAETSKQSEALSTGYSSAKTSSRPLRFYGN 569

Query: 75  CR 76
            R
Sbjct: 570 TR 571


>SB_2086| Best HMM Match : 7tm_1 (HMM E-Value=9.1e-07)
          Length = 827

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/58 (27%), Positives = 23/58 (39%)

Query: 2   SDPSPLAGMLPFDSIYEQPKPRFIFKMPRVVPDQKAKFESDDLFKRLSRESEVRYTGY 59
           S+    A   PF    E P+P    K+   +   K  F+ DDL      + E+   GY
Sbjct: 353 SEEESTAPKEPFYQTLEPPEPESPEKVSDPIQSSKQSFQKDDLLLEDKPKEELNPEGY 410


>SB_45235| Best HMM Match : CBM_20 (HMM E-Value=0.91)
          Length = 817

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 3/87 (3%)

Query: 97  HSPYNNRGCDFQKENGKAHIVSRFIMNGVCVRWR-GWIDLERLDGAGCLELDEER-AAIE 154
           HSP+  R C ++  + +A  + R +  G C   R  W+  E      C  L EE   AI 
Sbjct: 635 HSPFRLRNC-WEGRSVRASSLLRQLAKGGCAARRLSWLSEEETLKLFCNNLTEETDPAII 693

Query: 155 DAALRDQIERYNQRLRDFEDKQRAYRE 181
           +A  +   E   + +    D  +++ E
Sbjct: 694 EAVTKAAFEAVERIIERGADVSKSFTE 720


>SB_10355| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0037)
          Length = 1127

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 2/45 (4%)

Query: 151 AAIEDAALRDQIERYNQRLRDFEDKQRAYREHGEELRSHSHVHAQ 195
           A+I +  LR ++ +  +RL   E+  +A  EHG +++S    HA+
Sbjct: 760 ASIAEQELRAELNQQRRRLE--EELAKAAFEHGNKMQSMQEEHAE 802


>SB_23305| Best HMM Match : RVT_1 (HMM E-Value=0.0013)
          Length = 808

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)

Query: 14  DSIYEQPKPRFIFKMPRVVPDQKAKFESDDLFKRLSRESEVRY 56
           D ++    PRF     R++ DQ  +FE+D LFK+L   S VR+
Sbjct: 575 DRVFNDLIPRF-GSPARILHDQGKEFEND-LFKQLESLSGVRH 615


>SB_2495| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.2e-11)
          Length = 2024

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/41 (29%), Positives = 22/41 (53%)

Query: 147 DEERAAIEDAALRDQIERYNQRLRDFEDKQRAYREHGEELR 187
           D ER   E   L+ Q++    ++ + E   R  R+HG++L+
Sbjct: 456 DNERVQREVNRLKFQVQEKTAKISEHEHSLRMARQHGDKLQ 496


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.138    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,627,094
Number of Sequences: 59808
Number of extensions: 324100
Number of successful extensions: 921
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 897
Number of HSP's gapped (non-prelim): 32
length of query: 230
length of database: 16,821,457
effective HSP length: 80
effective length of query: 150
effective length of database: 12,036,817
effective search space: 1805522550
effective search space used: 1805522550
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)