Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001342-TA|BGIBMGA001342-PA|IPR003417|Core binding
factor, beta subunit
(230 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g12780.1 68417.m02005 auxilin-related low similarity to SP|Q2... 32 0.37
At5g65770.1 68418.m08276 nuclear matrix constituent protein-rela... 31 0.65
At1g05890.1 68414.m00617 zinc finger protein-related contains lo... 31 0.86
At4g12770.1 68417.m02004 auxilin-related low similarity to SP|Q2... 30 1.1
At1g20180.1 68414.m02522 hypothetical protein similar to At14a (... 30 1.1
At5g43660.1 68418.m05336 expressed protein similar to unknown pr... 29 2.0
At2g36010.3 68415.m04422 E2F transcription factor-3 (E2F3) ident... 29 2.0
At2g36010.1 68415.m04420 E2F transcription factor-3 (E2F3) ident... 29 2.0
At3g10180.1 68416.m01219 kinesin motor protein-related similar t... 29 2.6
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 29 3.5
At3g60910.1 68416.m06814 expressed protein low similarity to PIR... 28 4.6
At5g50100.1 68418.m06204 expressed protein contains Pfam domain ... 28 6.1
At5g47430.1 68418.m05844 expressed protein 28 6.1
At5g07660.1 68418.m00877 structural maintenance of chromosomes (... 28 6.1
At3g23640.1 68416.m02973 glycosyl hydrolase family 31 protein si... 27 8.0
>At4g12780.1 68417.m02005 auxilin-related low similarity to
SP|Q27974 Auxilin {Bos taurus}
Length = 485
Score = 31.9 bits (69), Expect = 0.37
Identities = 20/64 (31%), Positives = 31/64 (48%)
Query: 133 IDLERLDGAGCLELDEERAAIEDAALRDQIERYNQRLRDFEDKQRAYREHGEELRSHSHV 192
+D ER + +E +ER E + +IER +RL + +RA RE E + +H
Sbjct: 92 LDRERAEREAEMEKAQEREKEEREREQKRIERERERLVARQAVERATREARERAATEAHA 151
Query: 193 HAQR 196
QR
Sbjct: 152 KVQR 155
>At5g65770.1 68418.m08276 nuclear matrix constituent protein-related
low similarity to nuclear matrix constituent protein 1
(NMCP1) [Daucus carota] GI:2190187
Length = 1042
Score = 31.1 bits (67), Expect = 0.65
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 133 IDLERLDGAGC-LELDEERAAIEDAALRDQIERYNQRLRDFEDKQRAYREHGEELR 187
++L+RLD ++LD ER E A L+D +E + E ++ R +E+R
Sbjct: 704 VELKRLDAERLEIKLDRERREREWAELKDSVEELKVQREKLETQRHMLRAERDEIR 759
>At1g05890.1 68414.m00617 zinc finger protein-related contains low
similarity to zinc finger proteins and Pfam PF01485: IBR
domain
Length = 552
Score = 30.7 bits (66), Expect = 0.86
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 129 WRGWIDLERLDGAGCLELDEERAAIEDAALRDQIERYNQRLRDFEDKQRAYREHGEELRS 188
W G+I DG GCL L + A RD I+ +L EDK++ YR LRS
Sbjct: 158 WTGYISTTINDGPGCLMLKCPDPSCPAAIGRDMID----KLASKEDKEKYYRYF---LRS 210
Query: 189 HSHVHAQ 195
+ V+ +
Sbjct: 211 YVEVNRE 217
>At4g12770.1 68417.m02004 auxilin-related low similarity to
SP|Q27974 Auxilin {Bos taurus}
Length = 909
Score = 30.3 bits (65), Expect = 1.1
Identities = 19/64 (29%), Positives = 30/64 (46%)
Query: 133 IDLERLDGAGCLELDEERAAIEDAALRDQIERYNQRLRDFEDKQRAYREHGEELRSHSHV 192
+D ER + +E + R E + +IER +RL + +RA RE E + +H
Sbjct: 509 LDRERAEREAEMEKTQAREREEREREQKRIERERERLLARQAVERATREARERAATEAHA 568
Query: 193 HAQR 196
QR
Sbjct: 569 KVQR 572
>At1g20180.1 68414.m02522 hypothetical protein similar to At14a
(GI:11994571 and GI:11994573) [Arabidopsis thaliana]
Length = 391
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/58 (25%), Positives = 27/58 (46%)
Query: 135 LERLDGAGCLELDEERAAIEDAALRDQIERYNQRLRDFEDKQRAYREHGEELRSHSHV 192
L RL G C E++ + A +IE + LR+F + + + +EL H ++
Sbjct: 313 LSRLAGRLCDEIEHRKTVAAMCAKSRKIEVLKEALREFNGHEEKFSDQLQELEEHLYL 370
>At5g43660.1 68418.m05336 expressed protein similar to unknown
protein (gb|AAB72163.1)
Length = 361
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 34 DQKAKFESDDLFKRLSRE---SEVRYTGYRDRPPEERQMRF 71
++KAKF SD L K +SRE +R+ YR+ Q RF
Sbjct: 48 EEKAKFMSDILHKYISREECAKAIRFKNYREWIMSNYQPRF 88
>At2g36010.3 68415.m04422 E2F transcription factor-3 (E2F3)
identical to E2F transcription factor-3 E2F3
[Arabidopsis thaliana] gi|10443853|gb|AAG17610
Length = 485
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 144 LELDEERAAIEDAALRDQIERYNQRLRDFEDKQR 177
L+ + E A+E+ AL +QI + +RLRD + ++
Sbjct: 249 LQAEIENLALEEQALDNQIRQTEERLRDLSENEK 282
>At2g36010.1 68415.m04420 E2F transcription factor-3 (E2F3)
identical to E2F transcription factor-3 E2F3
[Arabidopsis thaliana] gi|10443853|gb|AAG17610
Length = 483
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 144 LELDEERAAIEDAALRDQIERYNQRLRDFEDKQR 177
L+ + E A+E+ AL +QI + +RLRD + ++
Sbjct: 247 LQAEIENLALEEQALDNQIRQTEERLRDLSENEK 280
>At3g10180.1 68416.m01219 kinesin motor protein-related similar to
centromere protein E GB:4502781 [Homo sapiens]
Length = 1348
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 144 LELDEERAAIED--AALRDQIERYNQRLRDFEDKQRAYREHGEELRSH--SHV 192
L+++ E+ +++ A L+ QIE NQ + E + EH E RS SH+
Sbjct: 748 LDVENEKLLLQEQCAGLQSQIEELNQEAQKHETSLKMLSEHHESERSDLLSHI 800
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 134 DLERLDG-AGCLELDEERAAIEDAALRDQIERYNQRLRDFEDKQRAYRE 181
D+ +DG L D + AA +D A+++ ++ +RL++ ED+ A RE
Sbjct: 15 DVGEMDGDMEALNPDLDMAAADDDAVKE-LDEMKKRLKEMEDEAAALRE 62
>At3g60910.1 68416.m06814 expressed protein low similarity to
PIR|I46078 endothelin converting enzyme from Bos
primigenius taurus
Length = 252
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 4 PSPLAGMLPFDSIYEQPKPRFIFKMPRVVPDQKAKFESDDLFK 46
P GMLP D + E P FI+ + D++A+ S L +
Sbjct: 207 PITSEGMLPHDYVLEDPDSHFIYICKKKDEDEEAQLPSYPLME 249
>At5g50100.1 68418.m06204 expressed protein contains Pfam domain
PF04134: Protein of unknown function, DUF393
Length = 214
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 61 DRPPEERQMRFMSGCREGHTEIAFTGTGTNLQLVFDHSPYNNRGCDFQKENGKAHIV 117
D P R++ + E H I F +N D+SP +N+G D++ G+ H +
Sbjct: 82 DCPLCMREVNMLMERNEKHGTIKFVDISSN-----DYSPEDNQGLDYKTVMGQIHAI 133
>At5g47430.1 68418.m05844 expressed protein
Length = 879
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 147 DEERAAIEDAALRDQIERYNQRLRDF--EDKQRAYREHGEELRSHSHVHAQR 196
+ +R + + ++R + R RD ED+ R +R H E H H +R
Sbjct: 700 ERDRQRDRERSRHQDVDREHDRTRDRRDEDRSRDHRHHRGETERSQHHHRKR 751
>At5g07660.1 68418.m00877 structural maintenance of chromosomes
(SMC) family protein similar to SMC-like protein (MIM)
[Arabidopsis thaliana] GI:5880614; contains Pfam profile
PF02463: RecF/RecN/SMC N terminal domain
Length = 1058
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 133 IDLERLDGAGCLELDEERAAIEDAALRD-QIERYNQRLRDFEDKQRAYREHGEELRSH 189
+++E+ + +EE +E A+ + E + +RD E KQR H +L+ H
Sbjct: 388 VEVEKAESLVSSLKEEENMVMEKASAGGKEKEHIEEMIRDHEKKQRNMNAHINDLKKH 445
>At3g23640.1 68416.m02973 glycosyl hydrolase family 31 protein
similar to alpha-glucosidase II from SP:Q9F234 [Bacillus
thermoamyloliquefaciens]; contains Pfam profile: PF01055
Glycosyl hydrolases family 31
Length = 991
Score = 27.5 bits (58), Expect = 8.0
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 132 WIDLERLDGAGCLELDEERAAIEDAALRD 160
W+D++ +DG C D+ER A +D
Sbjct: 233 WMDIDYMDGFRCFTFDKERFPDPSALAKD 261
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.321 0.138 0.423
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,368,908
Number of Sequences: 28952
Number of extensions: 235472
Number of successful extensions: 584
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 574
Number of HSP's gapped (non-prelim): 18
length of query: 230
length of database: 12,070,560
effective HSP length: 79
effective length of query: 151
effective length of database: 9,783,352
effective search space: 1477286152
effective search space used: 1477286152
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)
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