Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001342-TA|BGIBMGA001342-PA|IPR003417|Core binding
factor, beta subunit
(230 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q13951 Cluster: Core-binding factor subunit beta; n=42;... 188 1e-46
UniRef50_Q4H3S2 Cluster: Core-binding factor, b subunit; n=1; Ci... 153 3e-36
UniRef50_UPI0000E24525 Cluster: PREDICTED: hypothetical protein ... 90 4e-17
UniRef50_Q4RCC9 Cluster: Chromosome undetermined SCAF19216, whol... 83 6e-15
UniRef50_UPI000155C339 Cluster: PREDICTED: similar to core-bindi... 66 7e-10
UniRef50_Q95ZL9 Cluster: Brother (Drosophila tx factor partner) ... 45 0.001
UniRef50_A4KUC1 Cluster: Tlm Orf16; n=9; Bacteria|Rep: Tlm Orf16... 38 0.21
UniRef50_Q7SAJ0 Cluster: Putative uncharacterized protein NCU069... 37 0.48
UniRef50_A7F2U1 Cluster: Putative uncharacterized protein; n=1; ... 37 0.48
UniRef50_Q7UX64 Cluster: Putative uncharacterized protein; n=1; ... 36 1.1
UniRef50_Q6Y8G4 Cluster: Drebrin 1 isoform a; n=2; Eutheria|Rep:... 36 1.1
UniRef50_Q16643 Cluster: Drebrin; n=36; Euteleostomi|Rep: Drebri... 36 1.1
UniRef50_Q4RG74 Cluster: Chromosome 2 SCAF15106, whole genome sh... 34 2.6
UniRef50_Q21660 Cluster: Putative uncharacterized protein; n=2; ... 34 2.6
UniRef50_UPI00006CC842 Cluster: hypothetical protein TTHERM_0028... 33 4.5
UniRef50_Q6JBI7 Cluster: LMO7a; n=6; Rattus norvegicus|Rep: LMO7... 33 4.5
UniRef50_Q034X9 Cluster: Predicted transcriptional regulator; n=... 33 4.5
UniRef50_Q4DHE6 Cluster: Putative uncharacterized protein; n=2; ... 33 4.5
UniRef50_A6S9B3 Cluster: Putative uncharacterized protein; n=1; ... 33 4.5
UniRef50_O67124 Cluster: Probable DNA double-strand break repair... 33 4.5
UniRef50_Q8I5D1 Cluster: Putative uncharacterized protein; n=3; ... 33 6.0
UniRef50_A0D964 Cluster: Chromosome undetermined scaffold_41, wh... 33 6.0
UniRef50_A1S0I9 Cluster: SMC domain protein; n=1; Thermofilum pe... 33 6.0
UniRef50_UPI0000F2E73B Cluster: PREDICTED: hypothetical protein;... 33 7.9
UniRef50_Q2RKM1 Cluster: ABC transporter substrate-binding prote... 33 7.9
UniRef50_A7DA78 Cluster: Cyclic nucleotide-binding protein precu... 33 7.9
UniRef50_Q9LQ93 Cluster: T1N6.4 protein; n=3; Arabidopsis thalia... 33 7.9
>UniRef50_Q13951 Cluster: Core-binding factor subunit beta; n=42;
Eumetazoa|Rep: Core-binding factor subunit beta - Homo
sapiens (Human)
Length = 182
Score = 188 bits (457), Expect = 1e-46
Identities = 86/165 (52%), Positives = 116/165 (70%), Gaps = 8/165 (4%)
Query: 28 MPRVVPDQKAKFESDDLFKRLSRESEVRYTGYRDRPPEERQMRFMSGCREGHTEIAFTGT 87
MPRVVPDQ++KFE+++ F++LSRE E++YTG+RDRP EERQ RF + CR+G +EIAF T
Sbjct: 1 MPRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQARFQNACRDGRSEIAFVAT 60
Query: 88 GTNLQLVFDHSPY--------NNRGCDFQKENGKAHIVSRFIMNGVCVRWRGWIDLERLD 139
GTNL L F + + + D ++E GK ++ + I+NGVCV W+GWIDL+RLD
Sbjct: 61 GTNLSLQFFPASWQGEQRQTPSREYVDLEREAGKVYLKAPMILNGVCVIWKGWIDLQRLD 120
Query: 140 GAGCLELDEERAAIEDAALRDQIERYNQRLRDFEDKQRAYREHGE 184
G GCLE DEERA EDA + E +R R+FED+ R++RE E
Sbjct: 121 GMGCLEFDEERAQQEDALAQQAFEEARRRTREFEDRDRSHREEME 165
>UniRef50_Q4H3S2 Cluster: Core-binding factor, b subunit; n=1; Ciona
intestinalis|Rep: Core-binding factor, b subunit - Ciona
intestinalis (Transparent sea squirt)
Length = 181
Score = 153 bits (372), Expect = 3e-36
Identities = 72/138 (52%), Positives = 97/138 (70%), Gaps = 8/138 (5%)
Query: 25 IFKMPRVVPDQKAKFESDDLFKRLSRESEVRYTGYRDRPPEERQMRFMSGCREGHTEIAF 84
+ KMPRVV DQ+A ++S++LF+RLSR++E++YTGYRDR EERQ+RF + CR G EIAF
Sbjct: 2 LLKMPRVVSDQRATYDSNELFRRLSRDTEIKYTGYRDRGTEERQLRFQNSCRAGRAEIAF 61
Query: 85 TGTGTNLQLVF-DHSPYNNRG-------CDFQKENGKAHIVSRFIMNGVCVRWRGWIDLE 136
G+GTN L F S +G +F +E GK H+ + FI+NGVCV W+GW+DL
Sbjct: 62 VGSGTNFTLQFYPWSVEGGQGITPPKDYVNFDREPGKVHLKAPFILNGVCVCWKGWMDLH 121
Query: 137 RLDGAGCLELDEERAAIE 154
RL+G G + DEERA +E
Sbjct: 122 RLEGMGSIVYDEERAQLE 139
>UniRef50_UPI0000E24525 Cluster: PREDICTED: hypothetical protein
LOC468115, partial; n=1; Pan troglodytes|Rep: PREDICTED:
hypothetical protein LOC468115, partial - Pan
troglodytes
Length = 197
Score = 90.2 bits (214), Expect = 4e-17
Identities = 36/56 (64%), Positives = 49/56 (87%)
Query: 27 KMPRVVPDQKAKFESDDLFKRLSRESEVRYTGYRDRPPEERQMRFMSGCREGHTEI 82
KMPRVVPDQ++KFE+++ F++LSRE E++YTG+RDRP EERQ RF + CR+G +EI
Sbjct: 71 KMPRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQARFQNACRDGRSEI 126
Score = 50.4 bits (115), Expect = 4e-05
Identities = 21/33 (63%), Positives = 28/33 (84%)
Query: 28 MPRVVPDQKAKFESDDLFKRLSRESEVRYTGYR 60
MPRVVPDQ++KFE+++ F++LSRE EVR G R
Sbjct: 1 MPRVVPDQRSKFENEEFFRKLSRECEVRQAGGR 33
>UniRef50_Q4RCC9 Cluster: Chromosome undetermined SCAF19216, whole
genome shotgun sequence; n=6; Euteleostomi|Rep:
Chromosome undetermined SCAF19216, whole genome shotgun
sequence - Tetraodon nigroviridis (Green puffer)
Length = 76
Score = 83.0 bits (196), Expect = 6e-15
Identities = 37/69 (53%), Positives = 48/69 (69%)
Query: 113 KAHIVSRFIMNGVCVRWRGWIDLERLDGAGCLELDEERAAIEDAALRDQIERYNQRLRDF 172
+ ++ + I+NGVCV W+GWIDL RLDG G LE DEERA EDA + E +R RDF
Sbjct: 1 QVYLKAPMILNGVCVIWKGWIDLHRLDGMGYLEYDEERAQHEDALAQAAFEEARRRNRDF 60
Query: 173 EDKQRAYRE 181
ED+ R++RE
Sbjct: 61 EDRDRSHRE 69
>UniRef50_UPI000155C339 Cluster: PREDICTED: similar to
core-binding factor, beta subunit, partial; n=1;
Ornithorhynchus anatinus|Rep: PREDICTED: similar to
core-binding factor, beta subunit, partial -
Ornithorhynchus anatinus
Length = 117
Score = 66.1 bits (154), Expect = 7e-10
Identities = 27/42 (64%), Positives = 33/42 (78%)
Query: 54 VRYTGYRDRPPEERQMRFMSGCREGHTEIAFTGTGTNLQLVF 95
++YTG+RDRP EERQ RF + CR+G +EIAF TGTNL L F
Sbjct: 1 IKYTGFRDRPHEERQARFQNACRDGRSEIAFVATGTNLSLQF 42
>UniRef50_Q95ZL9 Cluster: Brother (Drosophila tx factor partner)
homolog protein 1; n=2; Caenorhabditis|Rep: Brother
(Drosophila tx factor partner) homolog protein 1 -
Caenorhabditis elegans
Length = 152
Score = 45.2 bits (102), Expect = 0.001
Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 8/113 (7%)
Query: 28 MPRVVPDQKAKFESDDLFKRLSRESEVRYTGYRDRPPEERQMRFMSGCREGHTEIAFTGT 87
M R DQ++ F++D +LS +E +++ + P ER+ RF + F T
Sbjct: 1 MKRTTTDQQSSFQTDYFLTQLSHFTEAKFSLFEHAPLSERRERFRVHVERDEMPLTFCKT 60
Query: 88 GTNLQLVFDHSPYNNRGCDFQKENGKAHIVSRFIMNGVCVRWRGWIDLERLDG 140
G N+ + + S N F+ + NG+ V+ G ++ E L+G
Sbjct: 61 GINIPVKLEWSQTNGNEISFRSR--------PLVFNGIWVKVIGAMNSESLEG 105
>UniRef50_A4KUC1 Cluster: Tlm Orf16; n=9; Bacteria|Rep: Tlm Orf16 -
Streptoalloteichus hindustanus
Length = 189
Score = 37.9 bits (84), Expect = 0.21
Identities = 32/115 (27%), Positives = 47/115 (40%), Gaps = 5/115 (4%)
Query: 33 PDQKAKFESDDLFKRLSRESEVRYTGYRDRPPEERQMRFMSGCREGHTEIAFTGT--GTN 90
P++ + L +RLS + R PE + EG+ + FT T GT
Sbjct: 75 PEEVPADPTPSLVERLSAAEQPIEASLR---PERTASALRAAIDEGYVIVRFTETRGGTE 131
Query: 91 LQLVFDHSPYNNRGCDFQKENGKAHIVSRFIMNGVCVRWRGWIDLERLDGAGCLE 145
L + D + G DF +G+ +V ++ VR IDL L G G LE
Sbjct: 132 LGIQLDQGATDLAGADFAAGSGEVTLVGTLTLDFEPVRCVARIDLATLAGQGRLE 186
>UniRef50_Q7SAJ0 Cluster: Putative uncharacterized protein
NCU06959.1; n=2; Pezizomycotina|Rep: Putative
uncharacterized protein NCU06959.1 - Neurospora crassa
Length = 761
Score = 36.7 bits (81), Expect = 0.48
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 130 RGWIDLERLDGAGCLELDEERAAIEDAALRDQIERYNQRLRDFEDKQRAYREHGEELRSH 189
R W++ ER A LE ++ER E + E +R + ++D++ A R+H R H
Sbjct: 465 RKWVNRER-QRAAALEREKEREKTETEGFARRKEEQLEREKSWDDEREAARKHHMYYRDH 523
Query: 190 SH 191
+H
Sbjct: 524 AH 525
>UniRef50_A7F2U1 Cluster: Putative uncharacterized protein; n=1;
Sclerotinia sclerotiorum 1980|Rep: Putative
uncharacterized protein - Sclerotinia sclerotiorum 1980
Length = 1336
Score = 36.7 bits (81), Expect = 0.48
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 146 LDEERAAIEDAALRDQIERYNQRLRDFEDKQRAYREHGEELRSHSHVHAQ 195
L++ RA E A +I N RLR+FED++++ R+ E+ S+ AQ
Sbjct: 505 LEKIRAQFERAGWEHRINASNGRLREFEDEEKSLRKEAFEINKRSNDRAQ 554
>UniRef50_Q7UX64 Cluster: Putative uncharacterized protein; n=1;
Pirellula sp.|Rep: Putative uncharacterized protein -
Rhodopirellula baltica
Length = 451
Score = 35.5 bits (78), Expect = 1.1
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Query: 108 QKENGKAHIVSRFIMNG--VCVRWRGWIDLERLDGAGCLELDEERAAIEDAALRDQIERY 165
Q N + IV R ++ + +R GW G G LE ER ED D +
Sbjct: 344 QATNAERWIVDRLMVQADEIAMRQEGWYQ-----GTGSLEYLRERLQFEDEETLDGMLVP 398
Query: 166 NQRLRDFEDKQRAYREHGEEL 186
Q+LR+ E + R+H EEL
Sbjct: 399 FQKLRELEVGDQKTRQHREEL 419
>UniRef50_Q6Y8G4 Cluster: Drebrin 1 isoform a; n=2; Eutheria|Rep:
Drebrin 1 isoform a - Oryctolagus cuniculus (Rabbit)
Length = 668
Score = 35.5 bits (78), Expect = 1.1
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 144 LELDEERAAIEDAALRDQIERYNQRLRDFEDKQRAYREHGEELRSH 189
L +EER D LR + ER Q ++ E+++R YRE +++ H
Sbjct: 190 LRKEEERKKALDERLRFEQERMEQERQEQEERERRYREREQQIEEH 235
>UniRef50_Q16643 Cluster: Drebrin; n=36; Euteleostomi|Rep: Drebrin -
Homo sapiens (Human)
Length = 649
Score = 35.5 bits (78), Expect = 1.1
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 144 LELDEERAAIEDAALRDQIERYNQRLRDFEDKQRAYREHGEELRSH 189
L +EER D LR + ER Q ++ E+++R YRE +++ H
Sbjct: 190 LRKEEERKKALDERLRFEQERMEQERQEQEERERRYREREQQIEEH 235
>UniRef50_Q4RG74 Cluster: Chromosome 2 SCAF15106, whole genome
shotgun sequence; n=2; Tetraodontidae|Rep: Chromosome 2
SCAF15106, whole genome shotgun sequence - Tetraodon
nigroviridis (Green puffer)
Length = 956
Score = 34.3 bits (75), Expect = 2.6
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 136 ERLDGAGCLELDEERAAIEDAALRDQIERYNQRLRDFEDKQRAYREHGEEL 186
E+LD LE +R E AALR+++ N ++ DF+ + RE EL
Sbjct: 602 EKLDEVTALEEQHQRDEQEVAALREEVNCLNNQMADFQHDVQGSREREAEL 652
>UniRef50_Q21660 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 382
Score = 34.3 bits (75), Expect = 2.6
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 112 GKAHIVSRFIMNGVCVRWRGWIDLERLDGAGCLELDEERAA 152
GK H+V++FI G +RW W+ R G G DEE+ A
Sbjct: 286 GKIHVVTKFIKAGRKLRW--WVRGNRNFGLGVFHSDEEQVA 324
>UniRef50_UPI00006CC842 Cluster: hypothetical protein
TTHERM_00285670; n=1; Tetrahymena thermophila SB210|Rep:
hypothetical protein TTHERM_00285670 - Tetrahymena
thermophila SB210
Length = 1137
Score = 33.5 bits (73), Expect = 4.5
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 148 EERAAIEDAALRDQIERYNQRLRDFEDKQRAYREHGEELR 187
EE+ ED LR ++E+ + +FE KQR +++ EEL+
Sbjct: 257 EEKKMQEDEELRIRLEKEKEEEMEFERKQREFQQRQEELK 296
>UniRef50_Q6JBI7 Cluster: LMO7a; n=6; Rattus norvegicus|Rep: LMO7a -
Rattus norvegicus (Rat)
Length = 1729
Score = 33.5 bits (73), Expect = 4.5
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 138 LDGAGCLELDEERAAIEDAAL-RDQIERYNQRLR-DFEDKQRAYREHGEELRSHSHVHAQ 195
LD G DE+R +ED A+ DQ ++ +RL + E K++ EELR AQ
Sbjct: 1337 LDREGTRAGDEDRGQLEDDAVYEDQSQKLQERLMLEHEKKRKEQEAQEEELRKQREAEAQ 1396
>UniRef50_Q034X9 Cluster: Predicted transcriptional regulator; n=1;
Lactobacillus casei ATCC 334|Rep: Predicted
transcriptional regulator - Lactobacillus casei (strain
ATCC 334)
Length = 343
Score = 33.5 bits (73), Expect = 4.5
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 34 DQKAKFESDD-LFKRLSRESEVRYTGYRDRPPEERQMRFMSGCREGHTEIAFTGTGTNLQ 92
D++A + D+ F R + T +R +P + RF G + HT + G NL+
Sbjct: 190 DEQADDDPDEGKFVRFRLDYMRNITYHRQQPTHDHDERFRGGRLQNHTWYPYLGKPINLE 249
Query: 93 LVFDHSP 99
+++ + P
Sbjct: 250 ILYSYDP 256
>UniRef50_Q4DHE6 Cluster: Putative uncharacterized protein; n=2;
Trypanosoma cruzi|Rep: Putative uncharacterized protein
- Trypanosoma cruzi
Length = 703
Score = 33.5 bits (73), Expect = 4.5
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 114 AHIVSRFIMNGVCVRWRGWIDLERLDGAGCLELD--EERAAIEDAALRDQIERYNQRLRD 171
+ +V F + GVC WID D LE+D R+ E AA ++ Y + D
Sbjct: 83 SELVCAFFLRGVCHVKLSWIDKAIADFTAALEIDPSHSRSTYERAACHNRKGNYTAAILD 142
Query: 172 FE 173
+E
Sbjct: 143 YE 144
>UniRef50_A6S9B3 Cluster: Putative uncharacterized protein; n=1;
Botryotinia fuckeliana B05.10|Rep: Putative
uncharacterized protein - Botryotinia fuckeliana B05.10
Length = 835
Score = 33.5 bits (73), Expect = 4.5
Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 6/103 (5%)
Query: 3 DPSPLAGMLPFDSIYEQPKPRFIFKMPRVVPDQKAKFESDDLFKRLSRESEVRYTGYRDR 62
D P + ++ I ++ P + + +PD A + +DLF +++ + G++D
Sbjct: 538 DSPPPSYLIKSPGIIDRTLPYPNRREDKSLPDVAA-VQPEDLF-----DADDIFFGFQDM 591
Query: 63 PPEERQMRFMSGCREGHTEIAFTGTGTNLQLVFDHSPYNNRGC 105
P ER+++ + T G+G L FDH PY C
Sbjct: 592 TPHEREVQDRLDAEKEATRANSYGSGFRAPLHFDHCPYTAPIC 634
>UniRef50_O67124 Cluster: Probable DNA double-strand break repair
rad50 ATPase; n=1; Aquifex aeolicus|Rep: Probable DNA
double-strand break repair rad50 ATPase - Aquifex
aeolicus
Length = 978
Score = 33.5 bits (73), Expect = 4.5
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 149 ERAAIEDAALRDQIERYNQRLRDFEDKQRAYREHGEELRS 188
ER + +L+++I N +L++ E+K++ R+H EEL S
Sbjct: 632 ERLEDYEESLKEEINYINSKLQEIEEKEKKLRKHFEELSS 671
>UniRef50_Q8I5D1 Cluster: Putative uncharacterized protein; n=3;
Plasmodium|Rep: Putative uncharacterized protein -
Plasmodium falciparum (isolate 3D7)
Length = 1135
Score = 33.1 bits (72), Expect = 6.0
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 133 IDLERLDGAGCLELDEERAAIEDAALR--DQIERYNQRLRDFEDKQRAYREHGEELRSHS 190
+D + LD L+ + IED+ D + YN + + D ++ +EH E LR+++
Sbjct: 693 VDFDILDTFIKLKYTNKEVQIEDSTYNENDNVGEYNGKKEELRDSRKNEQEHTERLRNNN 752
Query: 191 HVHAQ 195
V+++
Sbjct: 753 MVNSE 757
>UniRef50_A0D964 Cluster: Chromosome undetermined scaffold_41, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_41,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 460
Score = 33.1 bits (72), Expect = 6.0
Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 146 LDEERAAIEDAALRDQIERYNQRLRDFEDKQR 177
L++E A+ + +R Q E YNQRLR++ED+ +
Sbjct: 141 LEQENVAMRNEFIRGQ-ESYNQRLREYEDRNK 171
>UniRef50_A1S0I9 Cluster: SMC domain protein; n=1; Thermofilum
pendens Hrk 5|Rep: SMC domain protein - Thermofilum
pendens (strain Hrk 5)
Length = 840
Score = 33.1 bits (72), Expect = 6.0
Identities = 16/39 (41%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Query: 145 ELDEERAAIEDAA--LRDQIERYNQRLRDFEDKQRAYRE 181
EL+EER ++E+ A L+ ++E +RL + E++ RA RE
Sbjct: 278 ELEEERRSLEEKAVKLKGELEAQRRRLGELEERGRAVRE 316
>UniRef50_UPI0000F2E73B Cluster: PREDICTED: hypothetical protein;
n=1; Monodelphis domestica|Rep: PREDICTED: hypothetical
protein - Monodelphis domestica
Length = 736
Score = 32.7 bits (71), Expect = 7.9
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 103 RGCDFQKENGKAHIVSRFIMNGVCVRWRGWIDLERLDGAGCLELDEERAAIEDAALRDQI 162
RGC+F E + R + N + W + + ++ +E+ EE A E+ + +
Sbjct: 137 RGCEFVLEWLRRTYWCRQLGNNLGEPWDSGVHIREIENGEEVEIVEEFDADEETPEEEPL 196
Query: 163 ERYNQRLRDFEDK-QRAYREHGEE 185
Q+ +D +DK ++A +GE+
Sbjct: 197 SEEAQKEKDLQDKIRKALLSYGEQ 220
>UniRef50_Q2RKM1 Cluster: ABC transporter substrate-binding protein
precursor; n=3; Bacteria|Rep: ABC transporter
substrate-binding protein precursor - Moorella
thermoacetica (strain ATCC 39073)
Length = 358
Score = 32.7 bits (71), Expect = 7.9
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 128 RWRGWIDLERLDGAGCLELDEERAAIEDAALRD 160
RW W+ ++ G L +D++RAA+ED A +D
Sbjct: 72 RWGKWLGVDITWYDGALSVDKQRAAVEDMATKD 104
>UniRef50_A7DA78 Cluster: Cyclic nucleotide-binding protein
precursor; n=3; Alphaproteobacteria|Rep: Cyclic
nucleotide-binding protein precursor - Methylobacterium
extorquens PA1
Length = 463
Score = 32.7 bits (71), Expect = 7.9
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 149 ERAAIEDAALRDQIERYNQRLRDFEDKQRAYREHGEEL 186
+RAAIED A+R +I++Y + + +Y E G EL
Sbjct: 179 DRAAIEDEAVRSRIDQYQEERDRLKGHTNSYGEQGIEL 216
>UniRef50_Q9LQ93 Cluster: T1N6.4 protein; n=3; Arabidopsis
thaliana|Rep: T1N6.4 protein - Arabidopsis thaliana
(Mouse-ear cress)
Length = 952
Score = 32.7 bits (71), Expect = 7.9
Identities = 14/54 (25%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 145 ELDEERAAIEDAALRDQ-IERYNQRLRDFEDKQRAYREHGEELRSHSHVHAQRC 197
E++E RA ++D +R++ ++ YN++LR ++ + + + EEL + C
Sbjct: 718 EIEEVRAIVQDGTVRNRSMQLYNEQLRHRKEMEESMKRQEEELEKTKKEKEEAC 771
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.321 0.138 0.423
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 249,890,579
Number of Sequences: 1657284
Number of extensions: 10536974
Number of successful extensions: 27356
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 27333
Number of HSP's gapped (non-prelim): 33
length of query: 230
length of database: 575,637,011
effective HSP length: 98
effective length of query: 132
effective length of database: 413,223,179
effective search space: 54545459628
effective search space used: 54545459628
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 71 (32.7 bits)
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