GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001342-TA|BGIBMGA001342-PA|IPR003417|Core binding
factor, beta subunit
         (230 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.03 |||microfibrillar-associated protein family protein|...    31   0.19 
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy...    29   0.43 
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    27   1.8  
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    27   2.3  
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac...    27   2.3  
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   5.3  
SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomy...    26   5.3  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    26   5.3  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    25   9.3  

>SPAC1782.03 |||microfibrillar-associated protein family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 355

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 136 ERLDGAGCLELDEERAAIEDAALRDQIERYNQRLRDFEDKQRAYREHGEE-LRSHSH 191
           ++ D    LEL+ E+ AIE+  L +  ER  Q L+D E  +R  ++   + L+ + H
Sbjct: 205 KKRDKEKSLELEREKMAIEERRLMNSEEREAQDLKDAEASRRGKKKSSMQFLQKYYH 261


>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 127 VRWRGWIDLERLDGAGCLELDEERAAIEDAALRDQIERYNQRLRDFEDKQR 177
           +RWR  I  E   G G    DE++  +E+    D+ ER +Q L+D  + +R
Sbjct: 318 LRWRLKIRDEM--GIGKKVEDEQKTVVEEIPEMDEEERLDQELQDLSEAER 366


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 40  ESDDLFKRLSRESEVRYTGYRDRPPEE 66
           + DD+FKRL ++ + R   YR R   E
Sbjct: 390 QEDDIFKRLKQQEDRRNENYRRRQQRE 416


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/41 (34%), Positives = 22/41 (53%)

Query: 147 DEERAAIEDAALRDQIERYNQRLRDFEDKQRAYREHGEELR 187
           D E A +     R+QI++  Q+ +   + QR  +E  EELR
Sbjct: 496 DWEAAKVGAPQSREQIQKQRQKAKTKLENQRRDKERQEELR 536


>SPCC1393.02c |||non-specific DNA binding protein Spt2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 406

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 148 EERAAIEDAALRDQIERYNQRLRDFEDKQR 177
           EE+AA   A L D++E   +R R+   K+R
Sbjct: 374 EEQAAARAARLEDELEEQRERERELAKKRR 403


>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/47 (23%), Positives = 28/47 (59%), Gaps = 2/47 (4%)

Query: 144 LELDEERAAIEDAA--LRDQIERYNQRLRDFEDKQRAYREHGEELRS 188
           L+++E   ++ + A  L +  E +N R ++FE+++++  +  +E  S
Sbjct: 245 LKVEEHEKSLNERATKLSEANENFNNRFKEFEEREKSAIKQNKEQSS 291


>SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 607

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 146 LDEERAAIEDAALRDQ-IERYNQRLRDFEDKQRAYREHGE 184
           L EE+   E  + RD+ ++RYN R R +  K+R    HG+
Sbjct: 168 LFEEQLLKEPDSRRDELVKRYNGRERVYLRKRRTRISHGD 207


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 158 LRDQIERYNQRLRDFEDKQRAYREHGEE 185
           L DQI R N+  ++FED    +R   EE
Sbjct: 409 LHDQISRMNEEGKNFEDIMLQFRSLEEE 436


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 79  HTEIAFTGTGTNLQLVFDHSPY 100
           +T + FTGTGT        SPY
Sbjct: 489 NTTVTFTGTGTGSATATSSSPY 510


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.138    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,003,762
Number of Sequences: 5004
Number of extensions: 42617
Number of successful extensions: 88
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 78
Number of HSP's gapped (non-prelim): 13
length of query: 230
length of database: 2,362,478
effective HSP length: 70
effective length of query: 160
effective length of database: 2,012,198
effective search space: 321951680
effective search space used: 321951680
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)