GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001342-TA|BGIBMGA001342-PA|IPR003417|Core binding
factor, beta subunit
         (230 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0017 - 19288171-19288437,19288770-19288989,19291630-19291754     31   1.0  
05_01_0471 - 3751497-3751522,3751760-3751800,3752466-3752507,375...    29   4.2  
04_04_1485 + 33915978-33916412                                         29   4.2  
11_04_0050 - 12819929-12820468,12820606-12820824,12820900-12821118     28   7.3  
07_03_0547 - 19339797-19340015                                         27   9.6  

>11_06_0017 - 19288171-19288437,19288770-19288989,19291630-19291754
          Length = 203

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 11/43 (25%), Positives = 27/43 (62%)

Query: 145 ELDEERAAIEDAALRDQIERYNQRLRDFEDKQRAYREHGEELR 187
           +L+EER   E+A +++ +E+  + L  +++ +R  +E  E ++
Sbjct: 128 KLEEERKKAEEAQMKEAMEQQQKELERYQELERLQKEREEAMK 170


>05_01_0471 -
           3751497-3751522,3751760-3751800,3752466-3752507,
           3753249-3753310,3753398-3753584,3753692-3753826,
           3753872-3753948,3754005-3754076,3754389-3754588,
           3754675-3755020,3755463-3755519,3755655-3757433,
           3757539-3757720,3757943-3758072
          Length = 1111

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/65 (24%), Positives = 27/65 (41%)

Query: 15  SIYEQPKPRFIFKMPRVVPDQKAKFESDDLFKRLSRESEVRYTGYRDRPPEERQMRFMSG 74
           SI ++ K  F+ +   V+ DQ   + + D +     ++ V  +      PEE Q      
Sbjct: 334 SILQKLKELFVLRQQAVLSDQNLAYSNSDEYAPEETQANVSLSCPEQCAPEEPQANTTPS 393

Query: 75  CREGH 79
           C E H
Sbjct: 394 CPELH 398


>04_04_1485 + 33915978-33916412
          Length = 144

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 147 DEERAAIEDAALRDQIERYNQRLRDFE 173
           DE    I DA +R Q+ RY  +LR+F+
Sbjct: 37  DETAREIVDAEVRRQVARYKHKLREFK 63


>11_04_0050 - 12819929-12820468,12820606-12820824,12820900-12821118
          Length = 325

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 154 EDAALRDQIERYNQRLRDFEDKQRAYRE 181
           E AALR Q+E Y  RL + E + ++  E
Sbjct: 109 EIAALRQQVEHYESRLSECEARMKSVEE 136


>07_03_0547 - 19339797-19340015
          Length = 72

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/19 (63%), Positives = 15/19 (78%), Gaps = 2/19 (10%)

Query: 130 RGWIDLERLDGAGCLELDE 148
           RGW +LER  GAGC+ L+E
Sbjct: 27  RGWEELER--GAGCVALEE 43


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.138    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,722,000
Number of Sequences: 37544
Number of extensions: 291174
Number of successful extensions: 671
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 667
Number of HSP's gapped (non-prelim): 5
length of query: 230
length of database: 14,793,348
effective HSP length: 80
effective length of query: 150
effective length of database: 11,789,828
effective search space: 1768474200
effective search space used: 1768474200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)