GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001342-TA|BGIBMGA001342-PA|IPR003417|Core binding
factor, beta subunit
         (230 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF515523-1|AAM61890.1|  222|Anopheles gambiae glutathione S-tran...    26   1.1  
AY063776-1|AAL59658.1|  224|Anopheles gambiae glutathione S-tran...    23   5.7  
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    23   5.7  

>AF515523-1|AAM61890.1|  222|Anopheles gambiae glutathione
           S-transferase u2 protein.
          Length = 222

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 12/20 (60%), Positives = 14/20 (70%)

Query: 169 LRDFEDKQRAYREHGEELRS 188
           L+ FED Q A R+ GE LRS
Sbjct: 193 LKGFEDDQEAARQVGEYLRS 212


>AY063776-1|AAL59658.1|  224|Anopheles gambiae glutathione
           S-transferase E1 protein.
          Length = 224

 Score = 23.4 bits (48), Expect = 5.7
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 22  PRFIFKMPRVVPDQKAKFESDDLFKRLSRESEVRYTGYRDRPPEER 67
           P  I +  RV  ++   FES  LF RL   +E+   G +   PE+R
Sbjct: 90  PTEIVEQARV--NEALHFESGVLFARLRFITELAIFGRKPEIPEDR 133


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 23.4 bits (48), Expect = 5.7
 Identities = 9/29 (31%), Positives = 17/29 (58%)

Query: 161 QIERYNQRLRDFEDKQRAYREHGEELRSH 189
           ++E+ ++ LR  ED+ +   E  EEL  +
Sbjct: 185 KLEKISEYLRTIEDRLKTLEEEKEELSEY 213


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.321    0.138    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,976
Number of Sequences: 2123
Number of extensions: 9650
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 3
length of query: 230
length of database: 516,269
effective HSP length: 62
effective length of query: 168
effective length of database: 384,643
effective search space: 64620024
effective search space used: 64620024
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 47 (23.0 bits)