Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001342-TA|BGIBMGA001342-PA|IPR003417|Core binding
factor, beta subunit
(230 letters)
Database: fruitfly
52,641 sequences; 24,830,863 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY058784-1|AAL14013.1| 213|Drosophila melanogaster SD08175p pro... 289 3e-78
AE014296-315|AAF47533.3| 213|Drosophila melanogaster CG7959-PA ... 289 3e-78
U22177-1|AAB03676.1| 184|Drosophila melanogaster Big brother pr... 252 4e-67
AE014296-320|AAF47538.3| 213|Drosophila melanogaster CG7960-PA ... 241 6e-64
U22176-1|AAB03675.1| 177|Drosophila melanogaster Brother protei... 211 7e-55
DQ138644-1|ABA86250.1| 164|Drosophila melanogaster CG7960 protein. 197 1e-50
BT023868-1|AAZ86789.1| 141|Drosophila melanogaster IP02703p pro... 149 4e-36
BT022738-1|AAY55154.1| 141|Drosophila melanogaster IP14459p pro... 149 4e-36
AF273707-1|AAL35409.1| 879|Drosophila melanogaster PFTAIRE-inte... 31 1.0
AE014297-819|AAO41521.1| 1308|Drosophila melanogaster CG33719-PB... 31 1.0
AE014297-816|AAO41518.1| 879|Drosophila melanogaster CG33719-PA... 31 1.0
BT025226-1|ABF17917.1| 391|Drosophila melanogaster FI01016p pro... 31 1.3
AE014296-1572|AAF50328.2| 391|Drosophila melanogaster CG5133-PA... 31 1.3
AB035412-1|BAA87864.1| 391|Drosophila melanogaster Tbx6 protein... 31 1.3
AY113519-1|AAM29524.1| 391|Drosophila melanogaster RE59988p pro... 30 3.1
AE013599-1733|AAF58364.1| 611|Drosophila melanogaster CG13330-P... 29 5.4
AE014134-885|AAZ66446.1| 11707|Drosophila melanogaster CG33715-P... 29 7.1
AJ271740-1|CAB93524.1| 16215|Drosophila melanogaster D-Titin pro... 28 9.4
AE014296-405|AAG22226.2| 18074|Drosophila melanogaster CG1915-PC... 28 9.4
>AY058784-1|AAL14013.1| 213|Drosophila melanogaster SD08175p
protein.
Length = 213
Score = 289 bits (708), Expect = 3e-78
Identities = 135/190 (71%), Positives = 162/190 (85%), Gaps = 5/190 (2%)
Query: 1 MSDPSPLAGMLPFDSI--YEQPKPRFIFKMPRVVPDQKAKFESDDLFKRLSRESEVRYTG 58
M + + LA M+P+D+I YEQPKPRFIFKMPRVVPDQK+KFESD+LF+RLSRESEVRYTG
Sbjct: 1 MMNEAALANMIPYDTIGLYEQPKPRFIFKMPRVVPDQKSKFESDELFRRLSRESEVRYTG 60
Query: 59 YRDRPPEERQMRFMSGCREGHTEIAFTGTGTNLQLVF--DHSPY-NNRGCDFQKENGKAH 115
YR+R EERQ+RFM+GCREGHTE +F +GTNLQLVF + +PY +++ CDF KE+GK H
Sbjct: 61 YRERSIEERQVRFMNGCREGHTEASFVASGTNLQLVFNANQNPYLHDKECDFDKEHGKVH 120
Query: 116 IVSRFIMNGVCVRWRGWIDLERLDGAGCLELDEERAAIEDAALRDQIERYNQRLRDFEDK 175
I S FIMNGVCVR+RGWIDLERLDG GCLE DE RA EDA LRDQI+RYNQRLR+FED
Sbjct: 121 IKSYFIMNGVCVRFRGWIDLERLDGVGCLEYDERRAMHEDAILRDQIDRYNQRLREFEDT 180
Query: 176 QRAYREHGEE 185
+RAYR++ ++
Sbjct: 181 KRAYRDNRQD 190
>AE014296-315|AAF47533.3| 213|Drosophila melanogaster CG7959-PA
protein.
Length = 213
Score = 289 bits (708), Expect = 3e-78
Identities = 135/190 (71%), Positives = 162/190 (85%), Gaps = 5/190 (2%)
Query: 1 MSDPSPLAGMLPFDSI--YEQPKPRFIFKMPRVVPDQKAKFESDDLFKRLSRESEVRYTG 58
M + + LA M+P+D+I YEQPKPRFIFKMPRVVPDQK+KFESD+LF+RLSRESEVRYTG
Sbjct: 1 MMNEAALANMIPYDTIGLYEQPKPRFIFKMPRVVPDQKSKFESDELFRRLSRESEVRYTG 60
Query: 59 YRDRPPEERQMRFMSGCREGHTEIAFTGTGTNLQLVF--DHSPY-NNRGCDFQKENGKAH 115
YR+R EERQ+RFM+GCREGHTE +F +GTNLQLVF + +PY +++ CDF KE+GK H
Sbjct: 61 YRERSIEERQVRFMNGCREGHTEASFVASGTNLQLVFNANQNPYLHDKECDFDKEHGKVH 120
Query: 116 IVSRFIMNGVCVRWRGWIDLERLDGAGCLELDEERAAIEDAALRDQIERYNQRLRDFEDK 175
I S FIMNGVCVR+RGWIDLERLDG GCLE DE RA EDA LRDQI+RYNQRLR+FED
Sbjct: 121 IKSYFIMNGVCVRFRGWIDLERLDGVGCLEYDERRAMHEDAILRDQIDRYNQRLREFEDT 180
Query: 176 QRAYREHGEE 185
+RAYR++ ++
Sbjct: 181 KRAYRDNRQD 190
>U22177-1|AAB03676.1| 184|Drosophila melanogaster Big brother
protein protein.
Length = 184
Score = 252 bits (616), Expect = 4e-67
Identities = 116/161 (72%), Positives = 139/161 (86%), Gaps = 3/161 (1%)
Query: 28 MPRVVPDQKAKFESDDLFKRLSRESEVRYTGYRDRPPEERQMRFMSGCREGHTEIAFTGT 87
MPRVVPDQK+KFESD+LF+RLSRESEVRYTGYR+R EERQ+RFM+GCREGHTE +F +
Sbjct: 1 MPRVVPDQKSKFESDELFRRLSRESEVRYTGYRERSIEERQVRFMNGCREGHTEASFVAS 60
Query: 88 GTNLQLVFD--HSPY-NNRGCDFQKENGKAHIVSRFIMNGVCVRWRGWIDLERLDGAGCL 144
GTNLQLVF+ +PY +++ CDF KE+GK HI S FIMNGVCVR+RGWIDL+RLDG GCL
Sbjct: 61 GTNLQLVFNANQNPYLHDKECDFDKEHGKVHIKSYFIMNGVCVRFRGWIDLDRLDGVGCL 120
Query: 145 ELDEERAAIEDAALRDQIERYNQRLRDFEDKQRAYREHGEE 185
E DE RA EDA LRDQI+RYNQRLR+FED +RAYR++ ++
Sbjct: 121 EYDERRAMHEDAILRDQIDRYNQRLREFEDTKRAYRDNRQD 161
>AE014296-320|AAF47538.3| 213|Drosophila melanogaster CG7960-PA
protein.
Length = 213
Score = 241 bits (590), Expect = 6e-64
Identities = 113/197 (57%), Positives = 150/197 (76%), Gaps = 9/197 (4%)
Query: 1 MSDPSPLAGMLP-FDSI--YEQPKPRFIFKMPRVVPDQKAKFESDDLFKRLSRESEVRYT 57
+ D + + GM+P ++++ YEQPKPRFIFKMPRVVPDQ++KF+SD+LF+RLSRESEVRYT
Sbjct: 7 LGDAAAMNGMIPPYEAMAMYEQPKPRFIFKMPRVVPDQRSKFDSDELFRRLSRESEVRYT 66
Query: 58 GYRDRPPEERQMRFMSGCREGHTEIAFTGTGTNLQLVF--DHSPY-NNRGCDFQKENGKA 114
GYR+R EER+MRF++ CR+G+ EI+ +GTNLQL F +H+PY + CDF++E GK
Sbjct: 67 GYRERAMEERRMRFVNDCRKGYAEISMVASGTNLQLYFNANHNPYAQEQDCDFERERGKV 126
Query: 115 HIVSRFIMNGVCVRWRGWIDLERLDGAGCLELDEERAAIEDAALRDQIERYNQRLRDFED 174
H+ S FIMNGVCVR+RGW+DL+RLDGA CLE DE+RA EDA L++QI+ YNQR+ +
Sbjct: 127 HLRSSFIMNGVCVRFRGWVDLDRLDGAACLEFDEQRAQQEDAQLQEQIQSYNQRM---AE 183
Query: 175 KQRAYREHGEELRSHSH 191
+R Y H H
Sbjct: 184 SRRIYHTPQTPPEDHHH 200
>U22176-1|AAB03675.1| 177|Drosophila melanogaster Brother protein
protein.
Length = 177
Score = 211 bits (515), Expect = 7e-55
Identities = 97/167 (58%), Positives = 127/167 (76%), Gaps = 6/167 (3%)
Query: 28 MPRVVPDQKAKFESDDLFKRLSRESEVRYTGYRDRPPEERQMRFMSGCREGHTEIAFTGT 87
MPRVVPDQ++KF+SD+LF+RLSRESEVRYTGYR+R EER+MRF++ CR+G+ EI+ +
Sbjct: 1 MPRVVPDQRSKFDSDELFRRLSRESEVRYTGYRERAMEERRMRFVNDCRKGYAEISMVAS 60
Query: 88 GTNLQLVF--DHSPY-NNRGCDFQKENGKAHIVSRFIMNGVCVRWRGWIDLERLDGAGCL 144
GTNLQL F +H+PY + CDF++E GK H+ S FIMNGVCVR+RGW+DL+RLDGA CL
Sbjct: 61 GTNLQLYFNANHNPYAQEQDCDFERERGKVHLRSSFIMNGVCVRFRGWVDLDRLDGAACL 120
Query: 145 ELDEERAAIEDAALRDQIERYNQRLRDFEDKQRAYREHGEELRSHSH 191
+ DE+RA EDA L++QI+ YNQR+ + +R Y H H
Sbjct: 121 DFDEQRAQQEDAQLQEQIQSYNQRM---AESRRIYHTPQTPPEDHHH 164
>DQ138644-1|ABA86250.1| 164|Drosophila melanogaster CG7960 protein.
Length = 164
Score = 197 bits (480), Expect = 1e-50
Identities = 91/160 (56%), Positives = 120/160 (75%), Gaps = 6/160 (3%)
Query: 35 QKAKFESDDLFKRLSRESEVRYTGYRDRPPEERQMRFMSGCREGHTEIAFTGTGTNLQLV 94
Q++KF+SD+LF+RLSRESEVRYTGYR+R EER+MRF++ CR+G+ EI+ +GTNLQL
Sbjct: 1 QRSKFDSDELFRRLSRESEVRYTGYRERAMEERRMRFVNDCRKGYAEISMVASGTNLQLY 60
Query: 95 FD--HSPY-NNRGCDFQKENGKAHIVSRFIMNGVCVRWRGWIDLERLDGAGCLELDEERA 151
F+ H+PY + CDF++E GK H+ S FIMNGVCVR+RGW+DL+RLDGA CLE DE+RA
Sbjct: 61 FNANHNPYAQEQDCDFERERGKVHLRSSFIMNGVCVRFRGWVDLDRLDGAACLEFDEQRA 120
Query: 152 AIEDAALRDQIERYNQRLRDFEDKQRAYREHGEELRSHSH 191
EDA L++QI+ YNQR+ + +R Y H H
Sbjct: 121 QQEDAQLQEQIQSYNQRM---AESRRIYHTPQTPPEDHHH 157
>BT023868-1|AAZ86789.1| 141|Drosophila melanogaster IP02703p
protein.
Length = 141
Score = 149 bits (360), Expect = 4e-36
Identities = 69/130 (53%), Positives = 92/130 (70%), Gaps = 6/130 (4%)
Query: 65 EERQMRFMSGCREGHTEIAFTGTGTNLQLVFD--HSPY-NNRGCDFQKENGKAHIVSRFI 121
EER+MRF++ CR+G+ EI+ +GTNLQL F+ H+PY + CDF++E GK H+ S FI
Sbjct: 2 EERRMRFVNDCRKGYAEISMVASGTNLQLYFNANHNPYAQEQDCDFERERGKVHLRSSFI 61
Query: 122 MNGVCVRWRGWIDLERLDGAGCLELDEERAAIEDAALRDQIERYNQRLRDFEDKQRAYRE 181
MNGVCVR+RGW+DL+RLDGA CLE DE+RA EDA L++QI+ YNQR+ + +R Y
Sbjct: 62 MNGVCVRFRGWVDLDRLDGAACLEFDEQRAQQEDAQLQEQIQSYNQRM---AESRRIYHT 118
Query: 182 HGEELRSHSH 191
H H
Sbjct: 119 PQTPPEDHHH 128
>BT022738-1|AAY55154.1| 141|Drosophila melanogaster IP14459p
protein.
Length = 141
Score = 149 bits (360), Expect = 4e-36
Identities = 69/130 (53%), Positives = 92/130 (70%), Gaps = 6/130 (4%)
Query: 65 EERQMRFMSGCREGHTEIAFTGTGTNLQLVFD--HSPY-NNRGCDFQKENGKAHIVSRFI 121
EER+MRF++ CR+G+ EI+ +GTNLQL F+ H+PY + CDF++E GK H+ S FI
Sbjct: 2 EERRMRFVNDCRKGYAEISMVASGTNLQLYFNANHNPYAQEQDCDFERERGKVHLRSSFI 61
Query: 122 MNGVCVRWRGWIDLERLDGAGCLELDEERAAIEDAALRDQIERYNQRLRDFEDKQRAYRE 181
MNGVCVR+RGW+DL+RLDGA CLE DE+RA EDA L++QI+ YNQR+ + +R Y
Sbjct: 62 MNGVCVRFRGWVDLDRLDGAACLEFDEQRAQQEDAQLQEQIQSYNQRM---AESRRIYHT 118
Query: 182 HGEELRSHSH 191
H H
Sbjct: 119 PQTPPEDHHH 128
>AF273707-1|AAL35409.1| 879|Drosophila melanogaster
PFTAIRE-interacting factor 1A protein.
Length = 879
Score = 31.5 bits (68), Expect = 1.0
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 145 ELDE-ERAAIEDAALRDQIERYNQRLRDFEDKQRAYREHGEELRSHSHV 192
ELD E+AAI A + QI QR+++ E+ Q + + ELR + +
Sbjct: 152 ELDAAEKAAISRAKKQAQIGELMQRIKELEEMQSSLEDEASELREQNEL 200
>AE014297-819|AAO41521.1| 1308|Drosophila melanogaster CG33719-PB,
isoform B protein.
Length = 1308
Score = 31.5 bits (68), Expect = 1.0
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 145 ELDE-ERAAIEDAALRDQIERYNQRLRDFEDKQRAYREHGEELRSHSHV 192
ELD E+AAI A + QI QR+++ E+ Q + + ELR + +
Sbjct: 152 ELDAAEKAAISRAKKQAQIGELMQRIKELEEMQSSLEDEASELREQNEL 200
>AE014297-816|AAO41518.1| 879|Drosophila melanogaster CG33719-PA,
isoform A protein.
Length = 879
Score = 31.5 bits (68), Expect = 1.0
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 145 ELDE-ERAAIEDAALRDQIERYNQRLRDFEDKQRAYREHGEELRSHSHV 192
ELD E+AAI A + QI QR+++ E+ Q + + ELR + +
Sbjct: 152 ELDAAEKAAISRAKKQAQIGELMQRIKELEEMQSSLEDEASELREQNEL 200
>BT025226-1|ABF17917.1| 391|Drosophila melanogaster FI01016p
protein.
Length = 391
Score = 31.1 bits (67), Expect = 1.3
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 4 PSPLAGMLPFDSIYEQPKPRFIFKMPRVVPDQKAKFESDDL---FKRLSRESEVRYTGYR 60
P P MLPF+ ++Q P + +P +AK E++DL F ++ E + +G R
Sbjct: 30 PDPFPSMLPFNMPHQQ--PHMMLPSRPTLPGVEAKLENNDLWQQFHKIGTEMIITKSGRR 87
Query: 61 DRP 63
P
Sbjct: 88 MFP 90
>AE014296-1572|AAF50328.2| 391|Drosophila melanogaster CG5133-PA
protein.
Length = 391
Score = 31.1 bits (67), Expect = 1.3
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 4 PSPLAGMLPFDSIYEQPKPRFIFKMPRVVPDQKAKFESDDL---FKRLSRESEVRYTGYR 60
P P MLPF+ ++Q P + +P +AK E++DL F ++ E + +G R
Sbjct: 30 PDPFPSMLPFNMPHQQ--PHMMLPSRPTLPGVEAKLENNDLWQQFHKIGTEMIITKSGRR 87
Query: 61 DRP 63
P
Sbjct: 88 MFP 90
>AB035412-1|BAA87864.1| 391|Drosophila melanogaster Tbx6 protein
protein.
Length = 391
Score = 31.1 bits (67), Expect = 1.3
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 4 PSPLAGMLPFDSIYEQPKPRFIFKMPRVVPDQKAKFESDDL---FKRLSRESEVRYTGYR 60
P P MLPF+ ++Q P + +P +AK E++DL F ++ E + +G R
Sbjct: 30 PDPFPSMLPFNMPHQQ--PHMMLPSRPTLPGVEAKLENNDLWQQFHKIGTEMIITKSGRR 87
Query: 61 DRP 63
P
Sbjct: 88 MFP 90
>AY113519-1|AAM29524.1| 391|Drosophila melanogaster RE59988p
protein.
Length = 391
Score = 29.9 bits (64), Expect = 3.1
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 4 PSPLAGMLPFDSIYEQPKPRFIFKMPRVVPDQKAKFESDDL---FKRLSRESEVRYTGYR 60
P P MLPF+ ++Q P + +P +AK +++DL F ++ E + +G R
Sbjct: 30 PDPFPSMLPFNMPHQQ--PHMMLPSRPTLPGVEAKLDNNDLWQQFHKIGTEMIITKSGRR 87
Query: 61 DRP 63
P
Sbjct: 88 MFP 90
>AE013599-1733|AAF58364.1| 611|Drosophila melanogaster CG13330-PA
protein.
Length = 611
Score = 29.1 bits (62), Expect = 5.4
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 149 ERAAIEDAALRDQIERYNQRLRDFEDKQRAYREH 182
ER E+ L ++ER QRLR+ E + + +RE+
Sbjct: 319 ERMRDEERLLELEVERERQRLRELERENQRHREY 352
>AE014134-885|AAZ66446.1| 11707|Drosophila melanogaster CG33715-PD,
isoform D protein.
Length = 11707
Score = 28.7 bits (61), Expect = 7.1
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 151 AAIEDAALRDQIERYNQRLRDFEDKQRAYR---EHGEELRSHSHV 192
++ ++ L+ Q+ER Q LR +D+Q++ E +L+SH V
Sbjct: 7843 SSTDEQVLKSQVERSQQLLRTLKDRQQSMEDLVEQTRQLQSHPDV 7887
>AJ271740-1|CAB93524.1| 16215|Drosophila melanogaster D-Titin protein.
Length = 16215
Score = 28.3 bits (60), Expect = 9.4
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 11 LPFDSIYEQPKPRFIFKMPRVVPDQKAKFESDDL 44
+P I EQ KP P++VP++K + E ++L
Sbjct: 6255 IPSKPIEEQQKPEKAIPGPQLVPEEKPESEEEEL 6288
>AE014296-405|AAG22226.2| 18074|Drosophila melanogaster CG1915-PC,
isoform C protein.
Length = 18074
Score = 28.3 bits (60), Expect = 9.4
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 11 LPFDSIYEQPKPRFIFKMPRVVPDQKAKFESDDL 44
+P I EQ KP P++VP++K + E ++L
Sbjct: 6255 IPSKPIEEQQKPEKAIPGPQLVPEEKPESEEEEL 6288
Database: fruitfly
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 24,830,863
Number of sequences in database: 52,641
Lambda K H
0.321 0.138 0.423
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,243,629
Number of Sequences: 52641
Number of extensions: 499731
Number of successful extensions: 1343
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1317
Number of HSP's gapped (non-prelim): 21
length of query: 230
length of database: 24,830,863
effective HSP length: 83
effective length of query: 147
effective length of database: 20,461,660
effective search space: 3007864020
effective search space used: 3007864020
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)
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