GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001342-TA|BGIBMGA001342-PA|IPR003417|Core binding
factor, beta subunit
         (230 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80446-5|AAK73881.1|  152|Caenorhabditis elegans Brother (drosop...    45   4e-05
Z69793-4|CAA93675.3|  382|Caenorhabditis elegans Hypothetical pr...    34   0.074
U50197-4|AAA91257.1|  443|Caenorhabditis elegans Intermediate fi...    32   0.40 
U29244-14|AAC71095.1|  774|Caenorhabditis elegans Fzo (fzo mitoc...    29   3.7  
AC024859-11|AAK29981.1|  933|Caenorhabditis elegans Hypothetical...    28   4.9  
AC024859-10|ABA00158.1|  832|Caenorhabditis elegans Hypothetical...    28   4.9  
AC006733-5|AAF60485.2|  193|Caenorhabditis elegans Hypothetical ...    28   4.9  
Z46828-8|CAE17900.1|  166|Caenorhabditis elegans Hypothetical pr...    28   6.5  
AL023832-3|CAE17976.1|  166|Caenorhabditis elegans Hypothetical ...    28   6.5  
AL021497-12|CAA16402.2| 1222|Caenorhabditis elegans Hypothetical...    28   6.5  

>U80446-5|AAK73881.1|  152|Caenorhabditis elegans Brother
           (drosophila tx factor partner)homolog protein 1 protein.
          Length = 152

 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 8/113 (7%)

Query: 28  MPRVVPDQKAKFESDDLFKRLSRESEVRYTGYRDRPPEERQMRFMSGCREGHTEIAFTGT 87
           M R   DQ++ F++D    +LS  +E +++ +   P  ER+ RF          + F  T
Sbjct: 1   MKRTTTDQQSSFQTDYFLTQLSHFTEAKFSLFEHAPLSERRERFRVHVERDEMPLTFCKT 60

Query: 88  GTNLQLVFDHSPYNNRGCDFQKENGKAHIVSRFIMNGVCVRWRGWIDLERLDG 140
           G N+ +  + S  N     F+            + NG+ V+  G ++ E L+G
Sbjct: 61  GINIPVKLEWSQTNGNEISFRSR--------PLVFNGIWVKVIGAMNSESLEG 105


>Z69793-4|CAA93675.3|  382|Caenorhabditis elegans Hypothetical
           protein R03A10.5 protein.
          Length = 382

 Score = 34.3 bits (75), Expect = 0.074
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)

Query: 112 GKAHIVSRFIMNGVCVRWRGWIDLERLDGAGCLELDEERAA 152
           GK H+V++FI  G  +RW  W+   R  G G    DEE+ A
Sbjct: 286 GKIHVVTKFIKAGRKLRW--WVRGNRNFGLGVFHSDEEQVA 324


>U50197-4|AAA91257.1|  443|Caenorhabditis elegans Intermediate
           filament, d protein 2 protein.
          Length = 443

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 15/58 (25%), Positives = 30/58 (51%)

Query: 139 DGAGCLELDEERAAIEDAALRDQIERYNQRLRDFEDKQRAYREHGEELRSHSHVHAQR 196
           + A  +  + ER  +E A L +++ RY +++R  E + R         R+ +H H++R
Sbjct: 43  NAAAIIRDNREREKVEIADLNNRLARYVEKVRFLEAQNRVLENDIGVFRNAAHTHSER 100


>U29244-14|AAC71095.1|  774|Caenorhabditis elegans Fzo (fzo
           mitochondrial fusion protein)related protein 1 protein.
          Length = 774

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 148 EERAAIEDAALRDQIERYNQRLRDFEDKQRAYREHGEELRSHSHV 192
           E+R+ +++  L +    +N+   +F   ++AYRE  E+LR+  H+
Sbjct: 395 EQRSKLQNN-LNESTRTFNECRVNFTQFEKAYREQTEQLRAEVHL 438


>AC024859-11|AAK29981.1|  933|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.15a protein.
          Length = 933

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 147 DEERAAIEDAALRDQI--ERYNQRLRDFEDKQRAYREHGEELRS 188
           D+ R  IED A R     E+ N R +D E++Q    E   +LRS
Sbjct: 878 DQLRNLIEDVARRASPGPEQMNDRRQDLEERQERLAEKQRQLRS 921


>AC024859-10|ABA00158.1|  832|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.15b protein.
          Length = 832

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 147 DEERAAIEDAALRDQI--ERYNQRLRDFEDKQRAYREHGEELRS 188
           D+ R  IED A R     E+ N R +D E++Q    E   +LRS
Sbjct: 777 DQLRNLIEDVARRASPGPEQMNDRRQDLEERQERLAEKQRQLRS 820


>AC006733-5|AAF60485.2|  193|Caenorhabditis elegans Hypothetical
           protein Y32H12A.4 protein.
          Length = 193

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 133 IDLERL-DGAGCLELDEERAAIEDAALR-DQIERYNQRLRDFEDKQRAYREHGEELRSH 189
           ID E++ +G    E  +  ++ ED+    D  E      RDFE K+RA+   G  L+ H
Sbjct: 112 IDPEKVAEGLAHPESGKSLSSAEDSEDEADLTEEQRAHRRDFEKKRRAHYNEGAALKHH 170


>Z46828-8|CAE17900.1|  166|Caenorhabditis elegans Hypothetical
           protein Y19D2B.2 protein.
          Length = 166

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/51 (19%), Positives = 31/51 (60%), Gaps = 2/51 (3%)

Query: 145 ELDEERAAIEDAALRDQIERYNQRLRDFEDKQRA--YREHGEELRSHSHVH 193
           +L++E+AA+ +  +     +Y ++L+D ++K+ +  Y++H  + +   + +
Sbjct: 110 KLEQEKAALIEIMISQHKSKYEEKLKDKKEKRTSNYYKKHFNKFKKDENTY 160


>AL023832-3|CAE17976.1|  166|Caenorhabditis elegans Hypothetical
           protein Y19D2B.2 protein.
          Length = 166

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/51 (19%), Positives = 31/51 (60%), Gaps = 2/51 (3%)

Query: 145 ELDEERAAIEDAALRDQIERYNQRLRDFEDKQRA--YREHGEELRSHSHVH 193
           +L++E+AA+ +  +     +Y ++L+D ++K+ +  Y++H  + +   + +
Sbjct: 110 KLEQEKAALIEIMISQHKSKYEEKLKDKKEKRTSNYYKKHFNKFKKDENTY 160


>AL021497-12|CAA16402.2| 1222|Caenorhabditis elegans Hypothetical
            protein Y51A2D.15 protein.
          Length = 1222

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 1/30 (3%)

Query: 157  ALRDQIERYNQRLRDFEDKQRAYREHGEEL 186
            AL D+ ++Y+  ++DF+D+  A R H E+L
Sbjct: 1051 ALHDK-DQYHLEMKDFQDQLSALRRHKEKL 1079


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.138    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,546,007
Number of Sequences: 27539
Number of extensions: 245518
Number of successful extensions: 679
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 677
Number of HSP's gapped (non-prelim): 10
length of query: 230
length of database: 12,573,161
effective HSP length: 79
effective length of query: 151
effective length of database: 10,397,580
effective search space: 1570034580
effective search space used: 1570034580
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)