Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001341-TA|BGIBMGA001341-PA|undefined
         (220 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    23   1.9  
AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    21   5.8  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   5.8  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   5.8  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   5.8  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   7.6  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   7.6  
AJ850288-1|CAH64508.1|  510|Tribolium castaneum putative esteras...    21   7.6  

>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 77  RIRLNKTGKYEAEFPFVSHCGRERNYIRCDDLPIVFTHI-FHEDNVDFLSY 126
           +++L   G YE       +  ++ N + CD+      HI +H D  D   Y
Sbjct: 887 KVKLEYDGPYETSISSGQYTTKDPNEVTCDEEE---GHISYHPDKADCRMY 934


>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 12/37 (32%), Positives = 15/37 (40%)

Query: 139 PDKVYMLPLTGRVYHVAEEKFGGVGLIKSKLAIELSK 175
           P KVY  P  GR+      K   +  +K K  I   K
Sbjct: 85  PPKVYPTPYGGRLVWTLPGKTKMIAHLKDKKKIRAKK 121


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 12/37 (32%), Positives = 15/37 (40%)

Query: 139 PDKVYMLPLTGRVYHVAEEKFGGVGLIKSKLAIELSK 175
           P KVY  P  GR+      K   +  +K K  I   K
Sbjct: 399 PPKVYPTPYGGRLVWTLPGKTKMIAHLKDKKKIRAKK 435


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 12/37 (32%), Positives = 15/37 (40%)

Query: 139 PDKVYMLPLTGRVYHVAEEKFGGVGLIKSKLAIELSK 175
           P KVY  P  GR+      K   +  +K K  I   K
Sbjct: 632 PPKVYPTPYGGRLVWTLPGKTKMIAHLKDKKKIRAKK 668


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 12/37 (32%), Positives = 15/37 (40%)

Query: 139 PDKVYMLPLTGRVYHVAEEKFGGVGLIKSKLAIELSK 175
           P KVY  P  GR+      K   +  +K K  I   K
Sbjct: 632 PPKVYPTPYGGRLVWTLPGKTKMIAHLKDKKKIRAKK 668


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 141 KVYMLPLTGRVYHVAEEKF 159
           K +   LT ++Y V EEK+
Sbjct: 206 KPFFKLLTSKIYKVLEEKY 224


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 7/10 (70%), Positives = 8/10 (80%)

Query: 178 EFHNGDTRPP 187
           +F NGD RPP
Sbjct: 551 QFCNGDNRPP 560


>AJ850288-1|CAH64508.1|  510|Tribolium castaneum putative esterase
           protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 8/17 (47%), Positives = 9/17 (52%)

Query: 195 KKYELDLNWFDENVKRF 211
           K   LDL W  EN+  F
Sbjct: 163 KDMVLDLKWVQENIIHF 179


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.324    0.142    0.445 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,854
Number of Sequences: 317
Number of extensions: 2389
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 9
length of query: 220
length of database: 114,650
effective HSP length: 54
effective length of query: 166
effective length of database: 97,532
effective search space: 16190312
effective search space used: 16190312
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 42 (21.0 bits)