Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001341-TA|BGIBMGA001341-PA|undefined
         (220 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35416| Best HMM Match : Cyanate_lyase (HMM E-Value=0.076)           27   9.3  
SB_18736| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_26485| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  

>SB_35416| Best HMM Match : Cyanate_lyase (HMM E-Value=0.076)
          Length = 646

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 21  SQKKSLHYVQGQEPEPKIREYFYYIDH-QGMLFLDDARIKNFTS 63
           S KKS+H V G+EP  ++ +   ++    G    D A+ K FTS
Sbjct: 432 SSKKSVHNVYGEEPPQRVYKCGGHVGRSHGNNLKDFAKQKAFTS 475


>SB_18736| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1452

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 21  SQKKSLHYVQGQEPEPKIREYFYYIDH-QGMLFLDDARIKNFTS 63
           S KKS+H V G+EP  ++ +   ++    G    D A+ K FTS
Sbjct: 640 SSKKSVHNVYGEEPPQRVYKCGGHVGRSHGNNLKDFAKQKAFTS 683


>SB_26485| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 801

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 21  SQKKSLHYVQGQEPEPKIREYFYYIDH-QGMLFLDDARIKNFTS 63
           S KKS+H V G+EP  ++ +   ++    G    D A+ K FTS
Sbjct: 451 SSKKSVHNVYGEEPPQRVYKCGGHVGRSHGNNLKDFAKQKAFTS 494


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.324    0.142    0.445 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,579,624
Number of Sequences: 59808
Number of extensions: 300938
Number of successful extensions: 627
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 627
Number of HSP's gapped (non-prelim): 3
length of query: 220
length of database: 16,821,457
effective HSP length: 79
effective length of query: 141
effective length of database: 12,096,625
effective search space: 1705624125
effective search space used: 1705624125
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 58 (27.5 bits)