Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001341-TA|BGIBMGA001341-PA|undefined
         (220 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g08520.1 68418.m01011 myb family transcription factor contain...    29   2.5  

>At5g08520.1 68418.m01011 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 298

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)

Query: 184 TRPPTHLTWHNKKYELDLNWFDENVKRFNL-KINSVGN 220
           TR PT +  H +KY + LN  +++ +R ++  I SVGN
Sbjct: 150 TRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSVGN 187


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.324    0.142    0.445 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,459,975
Number of Sequences: 28952
Number of extensions: 226002
Number of successful extensions: 447
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 447
Number of HSP's gapped (non-prelim): 1
length of query: 220
length of database: 12,070,560
effective HSP length: 78
effective length of query: 142
effective length of database: 9,812,304
effective search space: 1393347168
effective search space used: 1393347168
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 58 (27.5 bits)