GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001341-TA|BGIBMGA001341-PA|undefined
         (220 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79600-7|CAI79194.1|  173|Caenorhabditis elegans Hypothetical pr...   115   2e-26
AC006659-2|AAF39883.2|  977|Caenorhabditis elegans Hypothetical ...    29   2.0  
U64855-7|AAB04984.1|  145|Caenorhabditis elegans Lipid binding p...    29   2.6  

>Z79600-7|CAI79194.1|  173|Caenorhabditis elegans Hypothetical
           protein F59C6.12 protein.
          Length = 173

 Score =  115 bits (277), Expect = 2e-26
 Identities = 65/152 (42%), Positives = 86/152 (56%), Gaps = 8/152 (5%)

Query: 28  YVQGQEPEPKIREYFYYIDHQGMLFLDDARIKNFTSCXXXXXXXXXXXXRIRLNKTGKYE 87
           Y QGQ    KIREYFYY+ H G LFLDD+R+KNFT+             +I+ NKTG+YE
Sbjct: 10  YTQGQY-NGKIREYFYYVSHNGFLFLDDSRMKNFTAAYKDIQFLNFFYRKIKENKTGRYE 68

Query: 88  AEFPFVSHCGRERNYIRCDDLPIVFTHIFHEDNVDFLSYGYAGDLLRTVFIPDKVYMLPL 147
             FP+VS CG ERN++RCDD P+V+T +  +     L  G +   +   F P  + M   
Sbjct: 69  DTFPWVSLCGIERNFLRCDDTPLVYTEL--DSTEKELRIGQS--TIYHSFQPSSLSM-NS 123

Query: 148 TGRVYHVAEEKFGGVGLIKSKLAIELSKYFEF 179
           +GRVYH      GG  L+  KL  +L + F F
Sbjct: 124 SGRVYHKC--PIGGKALVADKLTDKLYRRFRF 153


>AC006659-2|AAF39883.2|  977|Caenorhabditis elegans Hypothetical
           protein H16O14.1 protein.
          Length = 977

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/48 (25%), Positives = 27/48 (56%)

Query: 8   KIAKITDIIPQICSQKKSLHYVQGQEPEPKIREYFYYIDHQGMLFLDD 55
           K+++I +  P +  ++++L  V  ++ + K       I+H+G+ F DD
Sbjct: 834 KLSRINEEAPAVVPEQRNLEVVDEEQEDGKSENGSAKIEHKGVRFSDD 881


>U64855-7|AAB04984.1|  145|Caenorhabditis elegans Lipid binding
           protein protein 4 protein.
          Length = 145

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 25  SLHYVQGQEPEPKIREYFYYIDHQGMLFL 53
           S H+++  EPE     YFY ID Q  L +
Sbjct: 98  SEHHIRLNEPETSAETYFYTIDDQNQLVM 126


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.324    0.142    0.445 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,827,205
Number of Sequences: 27539
Number of extensions: 245092
Number of successful extensions: 507
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 504
Number of HSP's gapped (non-prelim): 3
length of query: 220
length of database: 12,573,161
effective HSP length: 79
effective length of query: 141
effective length of database: 10,397,580
effective search space: 1466058780
effective search space used: 1466058780
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 58 (27.5 bits)