BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001341-TA|BGIBMGA001341-PA|undefined (220 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g08520.1 68418.m01011 myb family transcription factor contain... 29 2.5 >At5g08520.1 68418.m01011 myb family transcription factor contains Pfam profile: PF00249 myb-like DNA-binding domain Length = 298 Score = 29.1 bits (62), Expect = 2.5 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%) Query: 184 TRPPTHLTWHNKKYELDLNWFDENVKRFNL-KINSVGN 220 TR PT + H +KY + LN +++ +R ++ I SVGN Sbjct: 150 TRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSVGN 187 Database: arabidopsis Posted date: Oct 3, 2007 3:31 PM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.324 0.142 0.445 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 5,459,975 Number of Sequences: 28952 Number of extensions: 226002 Number of successful extensions: 447 Number of sequences better than 10.0: 1 Number of HSP's better than 10.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 447 Number of HSP's gapped (non-prelim): 1 length of query: 220 length of database: 12,070,560 effective HSP length: 78 effective length of query: 142 effective length of database: 9,812,304 effective search space: 1393347168 effective search space used: 1393347168 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 40 (21.5 bits) S2: 58 (27.5 bits)
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