Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001340-TA|BGIBMGA001340-PA|undefined
         (356 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14306| Best HMM Match : No HMM Matches (HMM E-Value=.)             184   7e-47
SB_14960| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   1e-07
SB_50086| Best HMM Match : DUF1295 (HMM E-Value=1.9e-12)               31   1.1  
SB_59115| Best HMM Match : Spectrin (HMM E-Value=0)                    29   5.8  
SB_7052| Best HMM Match : LRR_1 (HMM E-Value=2e-12)                    29   5.8  
SB_11248| Best HMM Match : LMP (HMM E-Value=0.18)                      29   7.6  

>SB_14306| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 963

 Score =  184 bits (449), Expect = 7e-47
 Identities = 107/280 (38%), Positives = 162/280 (57%), Gaps = 20/280 (7%)

Query: 49  LVNNNDPTVEIRALKF-KTCYVEALKELRIN-PLAHGQLTIRLLLDINETCLRSQGFFDL 106
           L +  D T +  A ++   C+  AL +  +    A G LT+  LLD  E CL    F D 
Sbjct: 502 LPDTEDLTADAAARQYWLDCFGAALDKFCVCFRSAFGALTVHSLLDTREQCLNEFDFPDP 561

Query: 107 WKQQKKFENEGALASLSSRLAEIDAITNDRQRWTELCRGVLAGNMFDWGAQAVTSILD-- 164
           + + K+ ENE AL   + R+ E+D + ++ QR   L RG+LAGN+FDWGA+ V+ +++  
Sbjct: 562 YAELKQQENEEALKMFTRRIRELDKMESE-QRQIALVRGMLAGNVFDWGAREVSDLMEKN 620

Query: 165 -CGLYEALEKIQ------------KRPWLFDGLEKWLDKLEKTVHHCAAIFVDNSGVDIV 211
             G   A+++++             RPWL D L++W+ + +   +  A +FVDNSGVDI+
Sbjct: 621 LLGFDTAMDRLEGKAFVWLFAPLSARPWLKDDLDEWISRTKGPPYKLAVVFVDNSGVDII 680

Query: 212 LGILPFVRGLLLRGTSVILCANEWPALNDVTNIELEEILQHASLICQVLAAALSTGDLVV 271
           LG++PFVR L+ RGT VIL AN +PALNDV + EL  +++  + +C  L +A+ +G LV 
Sbjct: 681 LGVMPFVRELVSRGTKVILAANSYPALNDVMHGELVILIERLAKLCPALKSAVKSGRLVA 740

Query: 272 KSSGQRGPCLDFRTISIGLCTEMKVRGVDLIILEGMGRAL 311
            +SG   PCLD R I   L         +L++LEGMG +L
Sbjct: 741 MASGVGSPCLDLRRIDADLAA--SCAEAELVLLEGMGSSL 778


>SB_14960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 54.8 bits (126), Expect = 1e-07
 Identities = 29/76 (38%), Positives = 49/76 (64%), Gaps = 6/76 (7%)

Query: 111 KKFENEGALASLSSRLAEIDAITNDRQRWTELCRGVLAGNMFDWGAQAVTSILD---CGL 167
           K+ ENE AL   + R+ E+D + ++ QR   L RG+LAGN+FDWGA+ V+ +++    G 
Sbjct: 2   KQQENEEALKMFTRRIRELDKMESE-QRQIALVRGMLAGNVFDWGAREVSDLMEKNLLGF 60

Query: 168 YEALEKIQKRP--WLF 181
             A+++++ +   WLF
Sbjct: 61  DTAMDRLEGKAFVWLF 76


>SB_50086| Best HMM Match : DUF1295 (HMM E-Value=1.9e-12)
          Length = 263

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 205 NSGVDIVLGILPFVRGLLLRGTSVILCAN-EWPALNDVTNIE 245
           N  VD +L   PF R  ++ GTSV+ CA   + AL+ ++ ++
Sbjct: 2   NPSVDAILLSSPFTRSCVVSGTSVVACAKYAFHALSSLSGVD 43


>SB_59115| Best HMM Match : Spectrin (HMM E-Value=0)
          Length = 1457

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)

Query: 154 WGAQAVTSI-LDCGLYEALEKIQKRPWLFDGLEKWLDKLEKTV 195
           W +  +TS+     L+E L  +Q+R    D L +WLDK EK +
Sbjct: 568 WESLRITSMERQTSLHEQLMSLQQRQ--IDQLAEWLDKAEKII 608


>SB_7052| Best HMM Match : LRR_1 (HMM E-Value=2e-12)
          Length = 1328

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 290 LCTEMKVRGVDLIILEGMGRALHTNFNACLAVDSLKLAVVKNAWLAQRLGGPLFSV 345
           LC EM+   +  I+L+ +G   H      +A   LKL  ++  WL+  L G  +SV
Sbjct: 656 LCLEMRHNNLVGILLQKLG---HDREAGVIAWGGLKLGELRPEWLSPALSGRNYSV 708


>SB_11248| Best HMM Match : LMP (HMM E-Value=0.18)
          Length = 442

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 24/92 (26%), Positives = 37/92 (40%)

Query: 39  KLVEKYVKFALVNNNDPTVEIRALKFKTCYVEALKELRINPLAHGQLTIRLLLDINETCL 98
           K+ +   +   V +     E RALK K   V+  K+L         LT   +  INE   
Sbjct: 202 KIEDSRAQIGAVESQRQQTEERALKMKAMLVKTKKDLAETKNQLTALTSNEIRTINENTK 261

Query: 99  RSQGFFDLWKQQKKFENEGALASLSSRLAEID 130
           R+    +    +   + E A AS  + LAE +
Sbjct: 262 RTVDGLEQKMAKVMADCEAARASQDATLAEFE 293


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.323    0.139    0.429 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,609,514
Number of Sequences: 59808
Number of extensions: 455877
Number of successful extensions: 936
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 927
Number of HSP's gapped (non-prelim): 8
length of query: 356
length of database: 16,821,457
effective HSP length: 83
effective length of query: 273
effective length of database: 11,857,393
effective search space: 3237068289
effective search space used: 3237068289
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 61 (28.7 bits)