GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001340-TA|BGIBMGA001340-PA|undefined
         (356 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY052625-1|AAL15473.1|  135|Tribolium castaneum tryptophan oxyge...    23   3.4  
AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan oxyge...    23   3.4  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    23   3.4  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    23   3.4  

>AY052625-1|AAL15473.1|  135|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 8/22 (36%), Positives = 15/22 (68%)

Query: 169 EALEKIQKRPWLFDGLEKWLDK 190
           E + K +K P L D +++WL++
Sbjct: 111 EQIAKSEKEPSLTDLVQRWLER 132


>AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 228

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 8/22 (36%), Positives = 15/22 (68%)

Query: 169 EALEKIQKRPWLFDGLEKWLDK 190
           E + K +K P L D +++WL++
Sbjct: 11  EQIAKSEKEPSLTDLVQRWLER 32


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 8/22 (36%), Positives = 15/22 (68%)

Query: 169 EALEKIQKRPWLFDGLEKWLDK 190
           E + K +K P L D +++WL++
Sbjct: 171 EQIAKSEKEPSLTDLVQRWLER 192


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 8/22 (36%), Positives = 15/22 (68%)

Query: 169 EALEKIQKRPWLFDGLEKWLDK 190
           E + K +K P L D +++WL++
Sbjct: 171 EQIAKSEKEPSLTDLVQRWLER 192


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.323    0.139    0.429 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,403
Number of Sequences: 317
Number of extensions: 3314
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 356
length of database: 114,650
effective HSP length: 58
effective length of query: 298
effective length of database: 96,264
effective search space: 28686672
effective search space used: 28686672
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 44 (21.8 bits)