GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001340-TA|BGIBMGA001340-PA|undefined
         (356 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY121699-1|AAM52026.1|  389|Drosophila melanogaster RE73673p pro...   357   1e-98
AE014134-881|AAF52219.1|  361|Drosophila melanogaster CG5828-PA ...   357   1e-98
AF145655-1|AAD38630.1|  667|Drosophila melanogaster BcDNA.GH0914...    29   7.4  
AE013599-297|AAF59298.1|  667|Drosophila melanogaster CG4445-PA ...    29   7.4  

>AY121699-1|AAM52026.1|  389|Drosophila melanogaster RE73673p
           protein.
          Length = 389

 Score =  357 bits (878), Expect = 1e-98
 Identities = 179/353 (50%), Positives = 240/353 (67%), Gaps = 9/353 (2%)

Query: 7   SHILYEPDKYNPDTLDLLADEEAREYWLCTCEKLVEKYVKFALVNNN-DPTVEIRALKFK 65
           S +L +P  Y PDTLDL  D +A +YW      +V K+ K A  +   D T   RA +F+
Sbjct: 32  SSLLPDPAVYQPDTLDLNTDGKAADYWFNCFRDMVAKFAKVAAKSQEEDHTATQRAEQFQ 91

Query: 66  TCYVEALKELRIN-PLAHGQLTIRL--LLDINETCLRSQGFFDLWKQQKKFENEGALASL 122
             Y++ L+E + N P+  G++ +    LL +NET LR  GF D W +QK+ EN  A+A L
Sbjct: 92  AAYLQRLEEHQRNVPVNKGKVILGTSELLKLNETLLRRYGFTDPWLRQKRLENASAVARL 151

Query: 123 SSRLAEIDAITNDRQRWTELCRGVLAGNMFDWGAQAVTSILD----CGLYEALEKIQKRP 178
             RL E+DA+ ++  RWTEL RGVLAGNMFDWGAQA+++IL+     GL+ AL++I+KRP
Sbjct: 152 KQRLQELDALADEDTRWTELVRGVLAGNMFDWGAQAISNILEQDSNFGLHSALDRIEKRP 211

Query: 179 WLFDGLEKWLDKLEKTVHHCAAIFVDNSGVDIVLGILPFVRGLLLRGTSVILCANEWPAL 238
           WL D L+ WL++L+   H CA +FVDNSGVD+VLG+LPFVRGLL RGT V+LCAN  PAL
Sbjct: 212 WLLDNLDSWLNRLKGEPHKCAVVFVDNSGVDVVLGVLPFVRGLLKRGTKVLLCANSEPAL 271

Query: 239 NDVTNIELEEILQHASLICQVLAAALSTGDLVVKSSGQRGPCLDFRTISIGLCTEMKVRG 298
           NDVT+ EL+ +L   S  C+VL  A S G L+V ++GQ GPCLD RT+   LC  +    
Sbjct: 272 NDVTSEELKSLLDDCSRECEVLEQAWSKGQLLVYANGQTGPCLDMRTLPKELCDAIAANE 331

Query: 299 VDLIILEGMGRALHTNFNACLAVDSLKLAVVKNAWLAQRLGG-PLFSVIFIYE 350
            DL+++EGMGRALHTN NA    ++LKLAV+KN WLA+ LGG  +F+V+  +E
Sbjct: 332 TDLLVIEGMGRALHTNLNARFGCETLKLAVIKNKWLAKYLGGEDMFAVVCKFE 384


>AE014134-881|AAF52219.1|  361|Drosophila melanogaster CG5828-PA
           protein.
          Length = 361

 Score =  357 bits (878), Expect = 1e-98
 Identities = 179/353 (50%), Positives = 240/353 (67%), Gaps = 9/353 (2%)

Query: 7   SHILYEPDKYNPDTLDLLADEEAREYWLCTCEKLVEKYVKFALVNNN-DPTVEIRALKFK 65
           S +L +P  Y PDTLDL  D +A +YW      +V K+ K A  +   D T   RA +F+
Sbjct: 4   SSLLPDPAVYQPDTLDLNTDGKAADYWFNCFRDMVAKFAKVAAKSQEEDHTATQRAEQFQ 63

Query: 66  TCYVEALKELRIN-PLAHGQLTIRL--LLDINETCLRSQGFFDLWKQQKKFENEGALASL 122
             Y++ L+E + N P+  G++ +    LL +NET LR  GF D W +QK+ EN  A+A L
Sbjct: 64  AAYLQRLEEHQRNVPVNKGKVILGTSELLKLNETLLRRYGFTDPWLRQKRLENASAVARL 123

Query: 123 SSRLAEIDAITNDRQRWTELCRGVLAGNMFDWGAQAVTSILD----CGLYEALEKIQKRP 178
             RL E+DA+ ++  RWTEL RGVLAGNMFDWGAQA+++IL+     GL+ AL++I+KRP
Sbjct: 124 KQRLQELDALADEDTRWTELVRGVLAGNMFDWGAQAISNILEQDSNFGLHSALDRIEKRP 183

Query: 179 WLFDGLEKWLDKLEKTVHHCAAIFVDNSGVDIVLGILPFVRGLLLRGTSVILCANEWPAL 238
           WL D L+ WL++L+   H CA +FVDNSGVD+VLG+LPFVRGLL RGT V+LCAN  PAL
Sbjct: 184 WLLDNLDSWLNRLKGEPHKCAVVFVDNSGVDVVLGVLPFVRGLLKRGTKVLLCANSEPAL 243

Query: 239 NDVTNIELEEILQHASLICQVLAAALSTGDLVVKSSGQRGPCLDFRTISIGLCTEMKVRG 298
           NDVT+ EL+ +L   S  C+VL  A S G L+V ++GQ GPCLD RT+   LC  +    
Sbjct: 244 NDVTSEELKSLLDDCSRECEVLEQAWSKGQLLVYANGQTGPCLDMRTLPKELCDAIAANE 303

Query: 299 VDLIILEGMGRALHTNFNACLAVDSLKLAVVKNAWLAQRLGG-PLFSVIFIYE 350
            DL+++EGMGRALHTN NA    ++LKLAV+KN WLA+ LGG  +F+V+  +E
Sbjct: 304 TDLLVIEGMGRALHTNLNARFGCETLKLAVIKNKWLAKYLGGEDMFAVVCKFE 356


>AF145655-1|AAD38630.1|  667|Drosophila melanogaster BcDNA.GH09147
           protein.
          Length = 667

 Score = 29.5 bits (63), Expect = 7.4
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 279 PCLDFRTISIGLCTEMKVRGVDLIILEGMGRALHTNFNACLAVDSLKLAVVK 330
           P      +++G CT    + +D+ ++   G+ + TN N CL     KL V+K
Sbjct: 535 PRSSLSAVTVGDCTS-HAQSMDMFVITPKGQIM-TNDNVCLTYRQQKLGVIK 584


>AE013599-297|AAF59298.1|  667|Drosophila melanogaster CG4445-PA
           protein.
          Length = 667

 Score = 29.5 bits (63), Expect = 7.4
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 279 PCLDFRTISIGLCTEMKVRGVDLIILEGMGRALHTNFNACLAVDSLKLAVVK 330
           P      +++G CT    + +D+ ++   G+ + TN N CL     KL V+K
Sbjct: 535 PRSSLSAVTVGDCTS-HAQSMDMFVITPKGQIM-TNDNVCLTYRQQKLGVIK 584


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.323    0.139    0.429 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,975,874
Number of Sequences: 52641
Number of extensions: 663103
Number of successful extensions: 1450
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1444
Number of HSP's gapped (non-prelim): 4
length of query: 356
length of database: 24,830,863
effective HSP length: 86
effective length of query: 270
effective length of database: 20,303,737
effective search space: 5482008990
effective search space used: 5482008990
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 62 (29.1 bits)