Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001340-TA|BGIBMGA001340-PA|undefined
(356 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U56966-2|AAA98718.1| 755|Caenorhabditis elegans Unidentified vi... 257 8e-69
AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical ... 29 5.0
AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage... 29 5.0
AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical ... 29 5.0
AF125462-2|AAD12854.1| 217|Caenorhabditis elegans Hypothetical ... 29 6.7
Z66494-10|CAF31472.1| 500|Caenorhabditis elegans Hypothetical p... 28 8.8
Z66494-9|CAA91260.1| 502|Caenorhabditis elegans Hypothetical pr... 28 8.8
>U56966-2|AAA98718.1| 755|Caenorhabditis elegans Unidentified
vitellogenin-linkedtranscript protein 3 protein.
Length = 755
Score = 257 bits (630), Expect = 8e-69
Identities = 138/344 (40%), Positives = 205/344 (59%), Gaps = 13/344 (3%)
Query: 18 PDTLDLLADEEAREYWLCTCEKLVEKYVKFALVN----NNDPTVEIRALKFKTCYVEALK 73
PDT+D DEEAR +W+ +K + KFA+ + +N + RA F++ +V+ +
Sbjct: 407 PDTIDFNKDEEARNFWIEILDKTINDITKFAIASQENCSNKEDLTNRAEDFQSDFVKTMD 466
Query: 74 ELRINPLAHGQLTIRLLLDINETCLRSQGFFDLWKQQKKFENEGALASLSSRLAEIDAIT 133
++ + +A+G R +L++ E L+ +GF D++ Q+K EN A+A L LA+ID +
Sbjct: 467 IIKEHHVAYGNSNARNMLEVREQILQEKGFDDIYVQKKHAENCTAIAELPRVLAKIDELK 526
Query: 134 NDRQRWTEL---CRGVLAGNMFDWGAQAVTSIL--DCGL--YEALEKIQKRPWLFDGLEK 186
N T L RG+LAGN+FDWGA+ V ++ + GL A++ ++ RPWLFDG +
Sbjct: 527 NTGDEKTVLEYVSRGLLAGNVFDWGAKEVVKMMNSESGLTFQTAIDHVENRPWLFDGFDS 586
Query: 187 WLDKLEKTVHHCAAIFVDNSGVDIVLGILPFVRGLLLRGTSVILCANEWPALNDVTNIEL 246
+ K ++ + IFVDNSG D +LGI+PF R LL G+ VI+CAN PALND+T E+
Sbjct: 587 FYKKHKE--YKSVLIFVDNSGFDYILGIIPFARELLRNGSRVIICANTSPALNDLTYREM 644
Query: 247 EEILQHASLICQVLAAALSTGDLVVKSSGQRGPCLDFRTISIGLCTEMKVRGVDLIILEG 306
E+ LA + + ++ +GQ PC+D R + L +K DL+++EG
Sbjct: 645 VELAPELKNADSDLAKFIDSNQMMFVQTGQESPCMDARRVHQDLNETVKKFNTDLVVIEG 704
Query: 307 MGRALHTNFNACLAVDSLKLAVVKNAWLAQRLGGPLFSVIFIYE 350
MGRALHTNFN DSLK AV+K WLA RLGG +FSV+F +E
Sbjct: 705 MGRALHTNFNVQFKCDSLKAAVIKTQWLADRLGGKMFSVVFKHE 748
>AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical
protein Y39A1B.3 protein.
Length = 1499
Score = 29.1 bits (62), Expect = 5.0
Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 3/93 (3%)
Query: 14 DKYNPDTLDLLADEEAREYWLCTCEKLVEKYVKF--ALVNNNDPTVEIRALKFKTCYVEA 71
D DT +A + REYW T +++EK + F + + +++ K T YV
Sbjct: 996 DDATDDTRKKMA-QRRREYWALTYCRVMEKLMAFIGEVAVQLNAYIQVTIPKLHTRYVSK 1054
Query: 72 LKELRINPLAHGQLTIRLLLDINETCLRSQGFF 104
+ + N + +R L D+ ++ + + F
Sbjct: 1055 MVDAEKNDANIREEPVRFLSDLEKSVAQRKTIF 1087
>AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage
compensation protein protein.
Length = 1455
Score = 29.1 bits (62), Expect = 5.0
Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 3/93 (3%)
Query: 14 DKYNPDTLDLLADEEAREYWLCTCEKLVEKYVKF--ALVNNNDPTVEIRALKFKTCYVEA 71
D DT +A + REYW T +++EK + F + + +++ K T YV
Sbjct: 952 DDATDDTRKKMA-QRRREYWALTYCRVMEKLMAFIGEVAVQLNAYIQVTIPKLHTRYVSK 1010
Query: 72 LKELRINPLAHGQLTIRLLLDINETCLRSQGFF 104
+ + N + +R L D+ ++ + + F
Sbjct: 1011 MVDAEKNDANIREEPVRFLSDLEKSVAQRKTIF 1043
>AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical
protein F53H1.1 protein.
Length = 970
Score = 29.1 bits (62), Expect = 5.0
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 110 QKKFENEGALASLSSRLAEIDAITNDRQRWTELCRGV--LAGNMFDWGAQAVTSILDCGL 167
+KK E E A + D + + EL +GV N+ W AQ LD
Sbjct: 66 EKKKEKESKTAIFEMEESRNDTEEVMKMKEAELLQGVERRRRNVEKWRAQKKKEELDLQS 125
Query: 168 YEALEKIQKRPW 179
++ EK +K+PW
Sbjct: 126 EQSDEKSEKKPW 137
>AF125462-2|AAD12854.1| 217|Caenorhabditis elegans Hypothetical
protein Y66H1A.5 protein.
Length = 217
Score = 28.7 bits (61), Expect = 6.7
Identities = 17/61 (27%), Positives = 27/61 (44%)
Query: 228 VILCANEWPALNDVTNIELEEILQHASLICQVLAAALSTGDLVVKSSGQRGPCLDFRTIS 287
VI+ A PA N ++ E L+ CQ L A++ ++ V S CL F +
Sbjct: 14 VIVVAQAGPAANSENHVNHVEQLKLQCAACQFLGLAVAEKNVKVPSDNAVAHCLKFEGCA 73
Query: 288 I 288
+
Sbjct: 74 V 74
>Z66494-10|CAF31472.1| 500|Caenorhabditis elegans Hypothetical
protein C34C6.6b protein.
Length = 500
Score = 28.3 bits (60), Expect = 8.8
Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 307 MGRALHTNFNACLAVDSLKLAVVKN---AWLAQRLGGPL 342
+G + N N AVDSLKLA+ KN A L RLG L
Sbjct: 364 LGVLYNLNRNFARAVDSLKLAISKNPTDARLWNRLGATL 402
>Z66494-9|CAA91260.1| 502|Caenorhabditis elegans Hypothetical
protein C34C6.6a protein.
Length = 502
Score = 28.3 bits (60), Expect = 8.8
Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 307 MGRALHTNFNACLAVDSLKLAVVKN---AWLAQRLGGPL 342
+G + N N AVDSLKLA+ KN A L RLG L
Sbjct: 366 LGVLYNLNRNFARAVDSLKLAISKNPTDARLWNRLGATL 404
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.323 0.139 0.429
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,710,761
Number of Sequences: 27539
Number of extensions: 347650
Number of successful extensions: 777
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 771
Number of HSP's gapped (non-prelim): 7
length of query: 356
length of database: 12,573,161
effective HSP length: 82
effective length of query: 274
effective length of database: 10,314,963
effective search space: 2826299862
effective search space used: 2826299862
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 60 (28.3 bits)
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