GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001339-TA|BGIBMGA001339-PA|IPR008518|Protein of unknown
function DUF800
         (198 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   2.9  
AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    22   3.8  
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    22   3.8  
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    21   8.8  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 84   TLDQHYFPSADDFPHGMPN-NSPPRNIKTYRSQGDGARTT 122
            T D     +++   HG+    +    +  Y S GDG RTT
Sbjct: 1151 TKDTKITAASETILHGLKKYTNYSMEVLAYTSGGDGVRTT 1190


>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 2/17 (11%)

Query: 82  IITLDQHYFP--SADDF 96
           I+TL  HYFP  SA D+
Sbjct: 342 IVTLSAHYFPVFSACDY 358


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 2/17 (11%)

Query: 82  IITLDQHYFP--SADDF 96
           I+TL  HYFP  SA D+
Sbjct: 268 IVTLSTHYFPVFSACDY 284


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 10/36 (27%), Positives = 19/36 (52%)

Query: 161 TAEELVHLRRQIVKLNRRVMSIEADNFKGNRRKKLL 196
           T E ++ L+ + V LN+++  I   NF    +  +L
Sbjct: 184 TTELVLMLQTRFVILNKQLTKITVKNFATKTQSAVL 219


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.137    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,005
Number of Sequences: 317
Number of extensions: 2437
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 198
length of database: 114,650
effective HSP length: 54
effective length of query: 144
effective length of database: 97,532
effective search space: 14044608
effective search space used: 14044608
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 41 (20.6 bits)