Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001339-TA|BGIBMGA001339-PA|IPR008518|Protein of unknown
function DUF800
(198 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 27 1.9
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 27 2.5
SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like protein|Schi... 26 3.3
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 25 5.7
SPAC2C4.08 |||conserved fungal protein|Schizosaccharomyces pombe... 25 5.7
SPAPB24D3.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 7.6
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S... 25 7.6
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 7.6
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa... 25 7.6
SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr 3... 25 7.6
SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomy... 25 10.0
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c... 25 10.0
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe... 25 10.0
SPCC584.14 |mug160||conserved eukaryotic protein|Schizosaccharom... 25 10.0
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 27.1 bits (57), Expect = 1.9
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 58 REIQL-DNAVLPTDPGMVRVSTPPRIITLDQHYFPSADDF 96
R++QL N+ + P +R+ T + + FPS DF
Sbjct: 881 RQVQLLSNSTIKMHPSQIRMMTNRNVANVKARLFPSMTDF 920
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 26.6 bits (56), Expect = 2.5
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 77 STPPRIITLDQHYFPSADDFPHGMPNNSPPRNIKTYRSQGDGAR-----TTTPR--PDHF 129
++PP +++ D S D P N+S ++ ++Q R TT+P+ P+
Sbjct: 379 NSPPSLLSTDNKIPESGSDHPSSQDNSSKASLVENSQTQSSTPRKPLPTTTSPKVNPEPH 438
Query: 130 NESI 133
+ESI
Sbjct: 439 SESI 442
>SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 308
Score = 26.2 bits (55), Expect = 3.3
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 91 PSADDFPHGMPNNSPP--RNIKTYRSQGDGARTTTP 124
PSA FP +PN+ P +NI + S+ +TP
Sbjct: 46 PSATSFPSALPNSENPVIQNISSSSSEPHHTSQSTP 81
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 25.4 bits (53), Expect = 5.7
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 55 APPREIQLDNAVLPTDPGMVRVSTPPRIITLDQHYFPSADDF 96
+P EI +A LP D VRV I L HYF A+ +
Sbjct: 2073 SPNEEIDA-SAKLPMDMPPVRVRKSSFISKLKPHYFMDAESY 2113
>SPAC2C4.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 243
Score = 25.4 bits (53), Expect = 5.7
Identities = 9/17 (52%), Positives = 14/17 (82%)
Query: 129 FNESIMTESRLVLRING 145
FN+ I+TE+ + +RING
Sbjct: 80 FNQKIITEAGITMRING 96
>SPAPB24D3.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 300
Score = 25.0 bits (52), Expect = 7.6
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 21 NGMVSGWDYANEKFDMKVPERIL 43
NG + WD ANE FD + I+
Sbjct: 78 NGPIHHWDIANELFDTALGVEII 100
>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 25.0 bits (52), Expect = 7.6
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 91 PSADDFPHGMPNNSPPRNIKTYRSQGD 117
P+ DDF H PNN +I T+ S D
Sbjct: 218 PATDDFSHNKPNNQ--ISISTFYSSLD 242
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.0 bits (52), Expect = 7.6
Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
Query: 71 PGMVRVSTPPRIITLDQHYFPSADDFPHGMPNNSPPRNIKTYRSQGDGARTTTPRPDHFN 130
P +V +PP IIT ++++ +P + + D + TP P
Sbjct: 590 PEKQKVLSPPPIITNFDKETLASNEAHEAVPQKPSAPQVTRLMAPQDSSSVVTPSP---- 645
Query: 131 ESIMTESRLVLRINGFRDPTPPIGNG 156
S++ +R V ++ DP G G
Sbjct: 646 TSLLDPARAVRKVIDGIDPPKEAGAG 671
>SPBC27B12.12c |||CorA family magnesium ion transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 25.0 bits (52), Expect = 7.6
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 76 VSTPPRIITLDQHYFPSADDFPHGMPNNSPPRNIKTYRSQGDGARTTTPRPDHFNESIMT 135
VS + +D+ + S +D P M + P K+ + D TT P+P + +++ +T
Sbjct: 249 VSGSDENLPIDKTLYLSVED-PSFMVHPRRPSATKSCSAAVDCPHTTIPKPPYQSDTDLT 307
Query: 136 E 136
E
Sbjct: 308 E 308
>SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 555
Score = 25.0 bits (52), Expect = 7.6
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 27 WDYANEKFDMKVPERI 42
WD NEKFD+++ E +
Sbjct: 210 WDIQNEKFDIRLLEEV 225
>SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 241
Score = 24.6 bits (51), Expect = 10.0
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Query: 93 ADDFPHGMPNNS---PPRNIKTYRSQGDGARTTTPRPDHFNESIMTESR 138
A D PHG+P+ P + + + GD RP+HF SR
Sbjct: 158 AQDLPHGLPHRRAALPCEALGFHPNVGDYFDWYPHRPNHFGGKFDGHSR 206
>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 547
Score = 24.6 bits (51), Expect = 10.0
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 87 QHYFPSADDFPHGMPNNSPPRNIKTYRSQGDGARTTTP 124
Q+ S D+ P + N PP + + G+RT TP
Sbjct: 275 QNILNSLDNNPAVLDLNGPPNQESSSSASSYGSRTQTP 312
>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 738
Score = 24.6 bits (51), Expect = 10.0
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 85 LDQHYFPSADDFPHGMPN 102
LD HY S+ FP+G+P+
Sbjct: 15 LDPHYKRSSVPFPYGLPD 32
>SPCC584.14 |mug160||conserved eukaryotic
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 431
Score = 24.6 bits (51), Expect = 10.0
Identities = 11/46 (23%), Positives = 21/46 (45%)
Query: 92 SADDFPHGMPNNSPPRNIKTYRSQGDGARTTTPRPDHFNESIMTES 137
+ D+ + N + K+ ++ GD + P HF ES+ +S
Sbjct: 16 NGDELTMKLIRNGLAKGFKSQKAAGDAGLYSRFLPYHFTESVSNDS 61
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.137 0.406
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,009,483
Number of Sequences: 5004
Number of extensions: 45198
Number of successful extensions: 112
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 103
Number of HSP's gapped (non-prelim): 15
length of query: 198
length of database: 2,362,478
effective HSP length: 69
effective length of query: 129
effective length of database: 2,017,202
effective search space: 260219058
effective search space used: 260219058
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)
- SilkBase 1999-2023 -