GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001339-TA|BGIBMGA001339-PA|IPR008518|Protein of unknown
function DUF800
         (198 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0550 + 18509365-18509589,18509668-18510644,18510828-185118...    31   0.48 
11_04_0001 + 11984639-11984875,11984989-11985278,11985361-119857...    29   1.9  
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    29   2.5  
09_02_0257 + 6355876-6356444,6356690-6357136,6357231-6359166           28   4.4  
08_02_0593 + 19078264-19078609,19078724-19082256                       28   4.4  
03_06_0614 - 35099225-35099461,35099545-35099694,35099919-351000...    28   4.4  

>08_02_0550 +
           18509365-18509589,18509668-18510644,18510828-18511802,
           18511885-18512142,18512216-18512326,18512418-18512496,
           18512595-18512687,18512773-18512958
          Length = 967

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 42/189 (22%), Positives = 71/189 (37%), Gaps = 14/189 (7%)

Query: 12  DIIDDETAPNGMVSGWDYANEKFDMKVPERILVIGQDQHVGTKAPPREIQLDNAVLPTDP 71
           DI DD           D+   + D   PE I+ +G           ++IQL +    TD 
Sbjct: 423 DIPDDYAKEEVRTVNEDHRMYEIDFPTPEDIVYLGDAVDQIILWHKKDIQLGS----TD- 477

Query: 72  GMVRVSTPPRIITLDQHYFPSADDFPHGMPNNSPPRNIKTYRSQGDGARTTTP---RPDH 128
                 +PPRI+    H   + D+ P   P ++ PR+    +      +   P   +  +
Sbjct: 478 ------SPPRILRSLCHALRNMDEEPRDPPEDASPRHQPEKQVDQPEKQADEPELAKQSN 531

Query: 129 FNESIMTESRLVLRINGFRDPTPPIGNGEGLSTAEELVHLRRQIVKLNRRVMSIEADNFK 188
             E    E  L   +    +P  P+ +   L   EE+V  R + V   R   ++E    K
Sbjct: 532 QPEKHADEPELAHPMPEQPEPEQPMLDKAELEREEEVVQEREKEVVQEREEEAVEEHKEK 591

Query: 189 GNRRKKLLM 197
              +KK ++
Sbjct: 592 SAPKKKFVV 600


>11_04_0001 +
           11984639-11984875,11984989-11985278,11985361-11985719,
           11985797-11985984,11986058-11986247,11986497-11986631,
           11986694-11986947
          Length = 550

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 104 SPPR----NIKTYRSQGDGARTTTPRPDHFNESIMTESRLVLRINGFRDPTPPI 153
           SPPR    N    RS      +T PRP+     ++ +   +LRI   +D  PPI
Sbjct: 265 SPPRKDAINDLGSRSPVKAQESTRPRPEIITGPMIGDEEEILRIRAAKDSRPPI 318


>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 19/56 (33%), Positives = 21/56 (37%), Gaps = 1/56 (1%)

Query: 52   GTKAPPREIQLDNAVLPTDPGMVR-VSTPPRIITLDQHYFPSADDFPHGMPNNSPP 106
            G   PP  I       P  PG +  V  PP I  L  H  P A   P G+    PP
Sbjct: 1096 GVAPPPPSIGAGAPPPPPPPGGITGVPPPPPIGGLGGHQAPPAPPLPEGIGGVPPP 1151


>09_02_0257 + 6355876-6356444,6356690-6357136,6357231-6359166
          Length = 983

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 4/82 (4%)

Query: 77  STPPR--IITLDQHYFPSADDFPHGMPNNSPPRNIKTYRSQGDGARTTTPRPDHFNESIM 134
           S P R  I+T+      S +  P G    S  R  K  +S   G R + PR      S  
Sbjct: 206 SDPDRANILTIMMAVGASEERAPKGHDGASGSR--KGDQSTPGGGRASGPRDGGSGGSRP 263

Query: 135 TESRLVLRINGFRDPTPPIGNG 156
            ++R   +  GF  P+PP G G
Sbjct: 264 ADARGKRKQEGFSSPSPPRGGG 285


>08_02_0593 + 19078264-19078609,19078724-19082256
          Length = 1292

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/58 (22%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 134 MTESRLVLRINGFRDPTPPIGNGEGLSTAEELVH-LRRQIVKLNRRVM-SIEADNFKG 189
           +   +++ ++ GF  P P +GN  G+   +E ++ +   +V L+R     I+  ++ G
Sbjct: 813 LAADKIIRKLPGFTKPGPTVGNVNGVEVGDEFMYRVELALVGLHRPYQGGIDTTDYNG 870


>03_06_0614 -
           35099225-35099461,35099545-35099694,35099919-35100066,
           35100152-35100231,35100428-35100594,35100692-35100940,
           35101025-35102310,35102423-35102544,35102946-35103272
          Length = 921

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 105 PPRNIKTYRSQGDGARTTTPRPDHFNESIMTE 136
           PPRN  + RS GD +R+T  R    + S+  E
Sbjct: 341 PPRNDHSGRSSGDSSRSTASRKHDDSASLSAE 372


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.137    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,122,980
Number of Sequences: 37544
Number of extensions: 346042
Number of successful extensions: 667
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 663
Number of HSP's gapped (non-prelim): 6
length of query: 198
length of database: 14,793,348
effective HSP length: 78
effective length of query: 120
effective length of database: 11,864,916
effective search space: 1423789920
effective search space used: 1423789920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)