GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001339-TA|BGIBMGA001339-PA|IPR008518|Protein of unknown
function DUF800
         (198 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29637| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.003
SB_9366| Best HMM Match : No HMM Matches (HMM E-Value=.)               35   0.052
SB_43832| Best HMM Match : CBM_14 (HMM E-Value=2.8e-16)                32   0.36 
SB_48199| Best HMM Match : Lig_chan (HMM E-Value=0)                    31   0.48 
SB_10198| Best HMM Match : MBT (HMM E-Value=0)                         29   1.9  
SB_50351| Best HMM Match : I-set (HMM E-Value=0.00016)                 29   1.9  
SB_33576| Best HMM Match : Pentaxin (HMM E-Value=1.3e-06)              28   5.9  
SB_20574| Best HMM Match : Extensin_2 (HMM E-Value=0.25)               28   5.9  
SB_12027| Best HMM Match : Extensin_2 (HMM E-Value=0.2)                28   5.9  
SB_7606| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.9  
SB_55131| Best HMM Match : fn3 (HMM E-Value=0.0083)                    27   7.8  
SB_39486| Best HMM Match : PsiF_repeat (HMM E-Value=5.9)               27   7.8  
SB_4398| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.8  
SB_808| Best HMM Match : ZZ (HMM E-Value=2.9e-05)                      27   7.8  
SB_30| Best HMM Match : DNA_pol_delta_4 (HMM E-Value=2.2)              27   7.8  
SB_32768| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  
SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091)             27   7.8  

>SB_29637| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 234

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 42/154 (27%), Positives = 69/154 (44%), Gaps = 13/154 (8%)

Query: 36  MKVPERILVIGQDQHVGTKAP--PREIQLDNAVLPT-DPGMVRVSTPPRIITLDQHYFPS 92
           M VP+RI++ G+      K    PRE++ D    PT +  M  + TPPR +T+D     +
Sbjct: 56  MNVPDRIVINGELGAFSGKRDEFPRELKDDFVPNPTINTFMGGMITPPRTLTVDD---TT 112

Query: 93  ADDFPHGMPNNSPPRNIKTYRSQGDGARTTTPRPDHFN-ESIMTESRLVLRINGFRDPTP 151
           +  +P G P     R  K    Q    +T +      + ESI T   +  ++N     + 
Sbjct: 113 SAHYPQGKPAPGK-RAEKHQHHQHHHIKTDSQERCQIDVESIKTGLEIAEQVNPMDSDSE 171

Query: 152 PIGNGEGLSTAEELVHLRRQIVKLNRRVMSIEAD 185
                E  +T  E+  LR+ +  L+RRV  +E +
Sbjct: 172 -----EEYATEYEVTDLRKSVCILHRRVSMLEKE 200


>SB_9366| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1221

 Score = 34.7 bits (76), Expect = 0.052
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 3/90 (3%)

Query: 65  AVLPTDPGMVRVSTPPRIITLDQHYFPSADDFPHGMPNNSPPRNIKTYRSQGDGARTTTP 124
           A+ P  P  ++ S P  I +      PS  +FP   P+ SP   ++T  S   GA+   P
Sbjct: 212 AMPPKSPAQMQGSYPGNIPSYQPMNSPSTGNFPSTYPSRSPISPVQTQMSA--GAQAFFP 269

Query: 125 RPDHFNESIMTESRLVLRINGFRDPTPPIG 154
                ++++ +   +     G R PT P+G
Sbjct: 270 SRSPVSQALHSPPGMAGNYTG-RSPTSPMG 298


>SB_43832| Best HMM Match : CBM_14 (HMM E-Value=2.8e-16)
          Length = 518

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 7/126 (5%)

Query: 38  VPERILVIGQ-DQHVGTKAPPREIQLDNAVLPTDPGMVRVSTPPRIITLDQH---YFPSA 93
           +PE+I   GQ D++   K    EI   N+       M+  +TP  ++    H   Y+   
Sbjct: 334 IPEKIKCYGQGDENASLKRTKTEITSPNSTFNHASRMLPTNTPSPLVQNGSHHFIYYHGE 393

Query: 94  DDFPHGMPNNSPPRNIKTYRSQGDGARTTTPRPDHFNESIMTESRLVLRINGFRDPTPPI 153
           D   +G  + S   +I   + +     T++  PD     I+T+ +   +     + TP  
Sbjct: 394 DQLSNGEKSTSQDNSIIITQDRTSPNNTSSSAPD--KSPILTDMKDFAQTFP-TEGTPKY 450

Query: 154 GNGEGL 159
            N +G+
Sbjct: 451 SNKDGM 456


>SB_48199| Best HMM Match : Lig_chan (HMM E-Value=0)
          Length = 771

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 4/86 (4%)

Query: 62  LDNAVLPTDPGMVRVSTPPRIITLDQHYFPSADDFPHGMPNNSP-PRNIKTYRSQGDGAR 120
           L+  V  TD G+ R  T P     DQ   PS D +    P N+   +N+   +S   G +
Sbjct: 683 LNTFVKGTDEGVNRSRTTPFAYLTDQ---PSLDYYNQRKPCNTMLVKNLLDAKSYALGLQ 739

Query: 121 TTTPRPDHFNESIMTESRLVLRINGF 146
             +   D  + +I+   +L+LRI GF
Sbjct: 740 RNSEWTDGISVAILQVRQLMLRIPGF 765


>SB_10198| Best HMM Match : MBT (HMM E-Value=0)
          Length = 753

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 3/33 (9%)

Query: 65  AVLPTDPGMVRVSTPPRIITLDQHYF-PSADDF 96
           AV PTDP  + V+T  R++  ++HYF  + DDF
Sbjct: 303 AVNPTDPSSICVATVSRVV--NEHYFVVTIDDF 333


>SB_50351| Best HMM Match : I-set (HMM E-Value=0.00016)
          Length = 419

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 8/111 (7%)

Query: 43  LVIGQDQHVGTKAPPREIQLDNAVLPTDPGMVRVSTPPRIITLDQHYFPSADDFPHGMPN 102
           L++ Q     +  PPR+ Q +N + P      + S+PP   T+ Q    S+        +
Sbjct: 236 LLLPQSDKQSSPPPPRDSQTNNHLFPPTGQSDKQSSPPPHGTVRQTIISSSLTGQSDKQS 295

Query: 103 NSPPRNIKTYRSQGD-GARTTTPRPDHFNESIMTESRLVLRINGFRDPTPP 152
           + PP      R Q D  + +T P      +S  T SR   + N    PTPP
Sbjct: 296 SPPPS-----RGQSDKQSPSTPPTVQSDKQSPPTPSR--GQSNKQSSPTPP 339


>SB_33576| Best HMM Match : Pentaxin (HMM E-Value=1.3e-06)
          Length = 799

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 25/93 (26%), Positives = 31/93 (33%), Gaps = 5/93 (5%)

Query: 38  VPERILVIGQDQHVGTKAPPREIQLDNAVLPTDPGMVRVSTPPRIITLDQHYFPSADDF- 96
           VP     I  DQH     P   I L    +P      +V  P   ITL QH  P+     
Sbjct: 345 VPNPSGTITLDQH-NVPNPSGTITLHQHNVPNPSDRHKVPNPSGTITLHQHNVPNPSGTI 403

Query: 97  ---PHGMPNNSPPRNIKTYRSQGDGARTTTPRP 126
               H +PN S    +  +       R   P P
Sbjct: 404 TLDQHNVPNPSGTITLHQHNVPNPSDRHKVPNP 436


>SB_20574| Best HMM Match : Extensin_2 (HMM E-Value=0.25)
          Length = 1508

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 10   TGDIIDDETAPNGMVSGWDYANEKFDMKVPERILVIGQDQHVGTKAPPREIQLDNAVLPT 69
            T DI  D  A NG V   DY  E+  M++           H G  A P+++  D+     
Sbjct: 1276 TSDISHDTYASNGRVEFLDY--ERASMEINGHSYRYTVSNHSGNFATPQDLSSDSY---K 1330

Query: 70   DPGMVRVSTPP 80
            DP +    T P
Sbjct: 1331 DPMLYNTGTHP 1341


>SB_12027| Best HMM Match : Extensin_2 (HMM E-Value=0.2)
          Length = 1706

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 10  TGDIIDDETAPNGMVSGWDYANEKFDMKVPERILVIGQDQHVGTKAPPREIQLDNAVLPT 69
           T DI  D  A NG V   DY  E+  M++           H G  A P+++  D+     
Sbjct: 673 TSDISHDTYASNGRVEFLDY--ERASMEINGHSYRYTVSNHSGNFATPQDLSSDSY---K 727

Query: 70  DPGMVRVSTPP 80
           DP +    T P
Sbjct: 728 DPMLYNTGTHP 738


>SB_7606| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 637

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 1/34 (2%)

Query: 160 STAEELVHLRRQIVKLNRRVMSIEADNFKGNRRK 193
           S  EE+VHL+++I  L  +V S EA+N   +++K
Sbjct: 16  SAEEEIVHLKKKIATLKSKVAS-EAENTPIDQKK 48


>SB_55131| Best HMM Match : fn3 (HMM E-Value=0.0083)
          Length = 1266

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 114 SQGDGARTTTPRPDHFNESIMTESR 138
           S+ +G RTT P+P   +  I TESR
Sbjct: 355 SESNGGRTTVPQPGTDSSRIETESR 379



 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 114 SQGDGARTTTPRPDHFNESIMTESR 138
           S+ +G RTT P+P   +  I TESR
Sbjct: 741 SESNGGRTTVPQPGTDSSRIETESR 765


>SB_39486| Best HMM Match : PsiF_repeat (HMM E-Value=5.9)
          Length = 91

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 78  TPPRIITLDQHYFPSADDFPHGMPNNSPPRNIKTYRSQGDGARTTTPRPDHFNESIMTES 137
           T PR+   ++H+  S+    HG P ++ PR +K  +S   G  TT       +   +T S
Sbjct: 33  TEPRLTAQERHHHRSSSVPAHGRPQSTEPR-LK--QSTATGQNTTITEESEVHGKHVTSS 89


>SB_4398| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 68 PTDPGMVRVSTPPRIITLD 86
          PT+ G + VSTPPRI  +D
Sbjct: 5  PTNDGALHVSTPPRIKLID 23


>SB_808| Best HMM Match : ZZ (HMM E-Value=2.9e-05)
          Length = 681

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 12/89 (13%)

Query: 99  GMPNNSPPR------NIKTYRSQGDGARTTTPRPDHFNESIMTESRLVLRINGFR----D 148
           G+    PPR      N  +  S G GA T+      F ES+   + L+ +++G R     
Sbjct: 438 GVSGPRPPRPRAGAMNFSSSSSSGSGATTSLSSTSSFRESMDPIAELLSQLSGVRRAAQQ 497

Query: 149 PTPPIGNGEGLSTAEELVHLRRQIVKLNR 177
             PP+ +   L   ++ + L RQ V+  R
Sbjct: 498 AQPPVQS--QLQLLQQQLQLERQQVQQTR 524


>SB_30| Best HMM Match : DNA_pol_delta_4 (HMM E-Value=2.2)
          Length = 269

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 78  TPPRIITLDQHYFPSADDFPHGMPNNSPPRNIKTYRSQGDGARTTTPRPDHFNESIMTES 137
           T PR+   ++H+  S+    HG P ++ PR +K  +S   G  TT       +   +T S
Sbjct: 33  TEPRLTAQERHHHRSSSVPAHGRPQSTEPR-LK--QSTATGQNTTITEESEVHGKHVTSS 89


>SB_32768| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1393

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 66   VLPTDP-GMVRVSTPPRIITLDQHYFPSADDFPHGMPNNSPPRNIKTYRSQGDGARTTTP 124
            +L TD   M+R  +  R++     + P+ D  P+G P  S  R+   YR    G   +  
Sbjct: 1330 MLHTDAISMIRGGSKVRLVLRRSSHPPTIDGLPNGEPPRSLSRS--AYRKSSSGDEFSRG 1387

Query: 125  RP 126
            RP
Sbjct: 1388 RP 1389


>SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091)
          Length = 761

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 108 NIKTYRSQGDGARTTTPRPDHFNESIMTES 137
           N  T   QG+G  +TTP     N+ + TES
Sbjct: 7   NTSTNEGQGNGTTSTTPSDRDANDIVTTES 36


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.137    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,769,614
Number of Sequences: 59808
Number of extensions: 357005
Number of successful extensions: 642
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 628
Number of HSP's gapped (non-prelim): 24
length of query: 198
length of database: 16,821,457
effective HSP length: 79
effective length of query: 119
effective length of database: 12,096,625
effective search space: 1439498375
effective search space used: 1439498375
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)