GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001339-TA|BGIBMGA001339-PA|IPR008518|Protein of unknown
function DUF800
         (198 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical ...    31   0.55 
AY145133-1|AAN52916.1|  435|Caenorhabditis elegans TCL-2 protein.      29   2.2  
AC024761-7|AAF59468.3|  435|Caenorhabditis elegans T cell lineag...    29   2.2  
Z54237-6|CAB54312.2|  645|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z54235-9|CAB54190.2|  645|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U40800-4|AAO91742.1|  763|Caenorhabditis elegans Hypothetical pr...    27   6.8  
U12965-3|AAZ32811.1|  980|Caenorhabditis elegans Hypothetical pr...    27   6.8  
AC091125-5|AAK27884.2|  297|Caenorhabditis elegans Hypothetical ...    27   6.8  
U41532-7|ABD63237.1|  769|Caenorhabditis elegans Hypothetical pr...    27   9.0  
U41532-6|AAF99908.2|  812|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical
           protein W05F2.7 protein.
          Length = 1424

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 27/97 (27%), Positives = 37/97 (38%), Gaps = 4/97 (4%)

Query: 57  PREIQLDNAVLPT--DPGMVRVSTP-PRIITLDQHYFPSADDFPHGMPNN-SPPRNIKTY 112
           P    +  A LPT    G   V+TP P ++      F      P  MP    PP    T+
Sbjct: 755 PSTPTISPAPLPTTGSSGGPDVTTPAPPVMVTGPLIFIIPTVIPSTMPTTPEPPTISSTF 814

Query: 113 RSQGDGARTTTPRPDHFNESIMTESRLVLRINGFRDP 149
                 A   TP P H  +S  T S +   ++ F +P
Sbjct: 815 TPAATQASPATPTPQHVAQSAPTNSIIGGSLDSFTNP 851


>AY145133-1|AAN52916.1|  435|Caenorhabditis elegans TCL-2 protein.
          Length = 435

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 5/105 (4%)

Query: 75  RVSTPPRIITLDQHYFPSADDFPHGMPNNSPPRNIKTYRSQGDGARTTTPRPDHFNESIM 134
           R+ TPP       H  P+ +  P G    SPP   K   +       +   PD   +SI 
Sbjct: 88  RIRTPPNRKKKISHEGPNQEALPPGFNLFSPPSRKKIKTAFSSPPPKSMKTPDSLRKSIR 147

Query: 135 TESRLVLRINGFRDPTPPIGNGEGLSTAEELVHLRRQIVKLNRRV 179
             S    ++   + P   + N E ++     +H+ R     N++V
Sbjct: 148 ISSPSPFKVTFSKTPL-KLSNNENVTG----IHIGRSGTYYNKQV 187


>AC024761-7|AAF59468.3|  435|Caenorhabditis elegans T cell lineage
           defect protein 2 protein.
          Length = 435

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 5/105 (4%)

Query: 75  RVSTPPRIITLDQHYFPSADDFPHGMPNNSPPRNIKTYRSQGDGARTTTPRPDHFNESIM 134
           R+ TPP       H  P+ +  P G    SPP   K   +       +   PD   +SI 
Sbjct: 88  RIRTPPNRKKKISHEGPNQEALPPGFNLFSPPSRKKIKTAFSSPPPKSMKTPDSLRKSIR 147

Query: 135 TESRLVLRINGFRDPTPPIGNGEGLSTAEELVHLRRQIVKLNRRV 179
             S    ++   + P   + N E ++     +H+ R     N++V
Sbjct: 148 ISSPSPFKVTFSKTPL-KLSNNENVTG----IHIGRSGTYYNKQV 187


>Z54237-6|CAB54312.2|  645|Caenorhabditis elegans Hypothetical
           protein T11B7.4b protein.
          Length = 645

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 14/40 (35%), Positives = 17/40 (42%)

Query: 87  QHYFPSADDFPHGMPNNSPPRNIKTYRSQGDGARTTTPRP 126
           QHY       P  +P+N PP N  +Y        TT  RP
Sbjct: 399 QHYQQHVVQAPPPVPSNPPPSNGSSYTKTSFERTTTETRP 438


>Z54235-9|CAB54190.2|  645|Caenorhabditis elegans Hypothetical
           protein T11B7.4b protein.
          Length = 645

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 14/40 (35%), Positives = 17/40 (42%)

Query: 87  QHYFPSADDFPHGMPNNSPPRNIKTYRSQGDGARTTTPRP 126
           QHY       P  +P+N PP N  +Y        TT  RP
Sbjct: 399 QHYQQHVVQAPPPVPSNPPPSNGSSYTKTSFERTTTETRP 438


>U40800-4|AAO91742.1|  763|Caenorhabditis elegans Hypothetical
           protein D2096.12 protein.
          Length = 763

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 11/90 (12%)

Query: 106 PRNIKTYRSQGDGARTTTPRPDHFNESIMTESRLVLRINGFRDPTPPIGNGEGLSTAE-E 164
           P ++  +RS   G R         N +I T S  V  +   R  TPP       ST   +
Sbjct: 171 PNSLARHRSANSGLR---------NAAIHTPSMRVANMFATRT-TPPFDTSSRPSTPSGD 220

Query: 165 LVHLRRQIVKLNRRVMSIEADNFKGNRRKK 194
           ++ LR Q+    R+V+ ++AD  K   +K+
Sbjct: 221 VIMLRDQLENEKRKVLRLQADFQKDVHKKE 250


>U12965-3|AAZ32811.1|  980|Caenorhabditis elegans Hypothetical
           protein F23F12.8 protein.
          Length = 980

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 27/93 (29%), Positives = 36/93 (38%), Gaps = 10/93 (10%)

Query: 58  REIQLDNAVLPTDPGMVRVSTP------PRIITLDQHYFPSADDFPHGMPNNSPPRNIKT 111
           R  +  NA   T PG VR +TP       R +   QH    A     GMP+   P     
Sbjct: 203 RNRERGNAPAFTRPGRVRTTTPMSVTHATRFVPGIQHKVTVAPKEVQGMPHTLAPYEKMD 262

Query: 112 YRSQGDGA-RTTTPRPDH---FNESIMTESRLV 140
            R    G    TT  P++   +N   MTE+  +
Sbjct: 263 RRPDSFGVEELTTMTPEYTVRYNGQTMTENEFL 295


>AC091125-5|AAK27884.2|  297|Caenorhabditis elegans Hypothetical
           protein Y67D2.7 protein.
          Length = 297

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 10/109 (9%)

Query: 79  PPRIITLDQHY-FPSADDFPH-GMPNNSPPRNIKTYRSQGDGARTTTPRPDHFNESIMTE 136
           PP    LD H   P+A   P  GMP+ +   ++ +Y   GD     +  P   + +    
Sbjct: 59  PPAPKRLDDHSPSPAAFRTPVIGMPHAASTTSLVSYSGDGDDDDEDSSEPPKISGATP-- 116

Query: 137 SRLVLRINGFRDPTPPIGNGEGLSTAEELVHLRRQIVKLNRRVMSIEAD 185
                 I+  R+P PP      + + EE   + R I + N  ++ +  D
Sbjct: 117 ------ISEIREPAPPPRQSRDVESDEEQELIDRAIKEGNEAILRMNID 159


>U41532-7|ABD63237.1|  769|Caenorhabditis elegans Hypothetical
           protein F11D5.1c protein.
          Length = 769

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 63  DNAVLPTDPGMVRVSTPPRIITLDQHYFPSADDFPHGMPNNSP-PRNIKTY 112
           D AVLP+DP   RVS  P    + ++   S        P   P P  ++TY
Sbjct: 312 DIAVLPSDPHSARVSIQPIPSIISENSSRSTTPVKASPPPEEPKPNVLETY 362


>U41532-6|AAF99908.2|  812|Caenorhabditis elegans Hypothetical
           protein F11D5.1a protein.
          Length = 812

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 63  DNAVLPTDPGMVRVSTPPRIITLDQHYFPSADDFPHGMPNNSP-PRNIKTY 112
           D AVLP+DP   RVS  P    + ++   S        P   P P  ++TY
Sbjct: 355 DIAVLPSDPHSARVSIQPIPSIISENSSRSTTPVKASPPPEEPKPNVLETY 405


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.317    0.137    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,727,494
Number of Sequences: 27539
Number of extensions: 272377
Number of successful extensions: 493
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 487
Number of HSP's gapped (non-prelim): 10
length of query: 198
length of database: 12,573,161
effective HSP length: 78
effective length of query: 120
effective length of database: 10,425,119
effective search space: 1251014280
effective search space used: 1251014280
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)