GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001339-TA|BGIBMGA001339-PA|IPR008518|Protein of unknown
function DUF800
         (198 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g23080.2 68414.m02886 auxin efflux carrier protein, putative ...    31   0.70 
At1g23080.1 68414.m02885 auxin efflux carrier protein, putative ...    31   0.70 
At2g43255.1 68415.m05376 expressed protein                             29   2.8  
At5g13560.1 68418.m01566 expressed protein weak similarity to SP...    28   3.7  
At4g25770.1 68417.m03709 expressed protein                             28   4.9  
At1g51470.1 68414.m05793 glycosyl hydrolase family 1 protein con...    28   4.9  
At1g47600.1 68414.m05285 glycosyl hydrolase family 1 protein con...    28   4.9  
At4g13980.1 68417.m02162 heat shock transcription factor family ...    27   8.6  
At2g19200.1 68415.m02240 expressed protein contains Pfam profile...    27   8.6  

>At1g23080.2 68414.m02886 auxin efflux carrier protein, putative
           similar to efflux carrier of polar auxin transport
           [Brassica juncea] gi|12331173|emb|CAC24691
          Length = 527

 Score = 30.7 bits (66), Expect = 0.70
 Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 10/81 (12%)

Query: 52  GTKAPPREIQLDNAVLPTDPGMVRVSTPPRIITLDQHYFPSADDFPHGMPNNSPPRNIKT 111
           GT   PR   L  A + +      ++T PR    +   F S   FP G  +N  P ++ +
Sbjct: 221 GTNMTPRPSNLTGAEIYS------LNTTPRGSNFNHSDFYSMMGFPGGRLSNFGPADMYS 274

Query: 112 YRSQGDGARTTTPRPDHFNES 132
            +S    +R  TPRP +F ES
Sbjct: 275 VQS----SRGPTPRPSNFEES 291


>At1g23080.1 68414.m02885 auxin efflux carrier protein, putative
           similar to efflux carrier of polar auxin transport
           [Brassica juncea] gi|12331173|emb|CAC24691
          Length = 619

 Score = 30.7 bits (66), Expect = 0.70
 Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 10/81 (12%)

Query: 52  GTKAPPREIQLDNAVLPTDPGMVRVSTPPRIITLDQHYFPSADDFPHGMPNNSPPRNIKT 111
           GT   PR   L  A + +      ++T PR    +   F S   FP G  +N  P ++ +
Sbjct: 221 GTNMTPRPSNLTGAEIYS------LNTTPRGSNFNHSDFYSMMGFPGGRLSNFGPADMYS 274

Query: 112 YRSQGDGARTTTPRPDHFNES 132
            +S    +R  TPRP +F ES
Sbjct: 275 VQS----SRGPTPRPSNFEES 291


>At2g43255.1 68415.m05376 expressed protein
          Length = 214

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 12/30 (40%), Positives = 21/30 (70%)

Query: 160 STAEELVHLRRQIVKLNRRVMSIEADNFKG 189
           S A+ L ++RR    ++R+++S+EA NF G
Sbjct: 75  SEADPLEYVRRARATIDRKILSLEAFNFYG 104


>At5g13560.1 68418.m01566 expressed protein weak similarity to
           SP|O42184 Restin (Cytoplasmic linker protein-170)
           (CLIP-170) {Gallus gallus}
          Length = 679

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 1/94 (1%)

Query: 104 SPPRNIKTYRSQGDGARTTTPRPDHFNESI-MTESRLVLRINGFRDPTPPIGNGEGLSTA 162
           SP  ++ + +S     ++  P     N S   T+++     N  + P P  G+ +  +  
Sbjct: 585 SPRSSVTSPKSSATSPKSPKPSSSSMNASTESTQTQKPELSNSPQAPNPAAGSSQEFNPE 644

Query: 163 EELVHLRRQIVKLNRRVMSIEADNFKGNRRKKLL 196
            EL  L  +  K+ R   + E D ++ +  +K L
Sbjct: 645 AELAELESEFGKVARDYSADEVDGWEFDELEKEL 678


>At4g25770.1 68417.m03709 expressed protein
          Length = 418

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 22  GMVSGWDYANEKFDMKVPERILVIGQDQHVGT 53
           G  + W YA E+F  K P+++LV   + +  T
Sbjct: 103 GSAADWKYAAEQFVKKFPDKVLVHRSESNSAT 134


>At1g51470.1 68414.m05793 glycosyl hydrolase family 1 protein
          contains Pfam PF00232 : Glycosyl hydrolase family 1
          domain; TIGRFAM TIGR01233:
          6-phospho-beta-galactosidase; similar to Myrosinase
          precursor (SP:P37702) [Arabidopsis thaliana]; similar
          to thioglucosidase (GI:871992) [Arabidopsis thaliana]
          Length = 511

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 17 ETAPNGMVSGWDYANEKFDMKVPER 41
          E A +  ++GWDY   ++  KVP+R
Sbjct: 66 EGAAHRALNGWDYFTHRYPEKVPDR 90


>At1g47600.1 68414.m05285 glycosyl hydrolase family 1 protein
          contains Pfam PF00232 : Glycosyl hydrolase family 1
          domain; TIGRFAM TIGR01233:
          6-phospho-beta-galactosidase; similar to
          thioglucosidase (GI:871992) [Arabidopsis thaliana]
          Length = 511

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 17 ETAPNGMVSGWDYANEKFDMKVPER 41
          E A +  ++GWDY   ++  KVP+R
Sbjct: 66 EGAAHRALNGWDYFTHRYPEKVPDR 90


>At4g13980.1 68417.m02162 heat shock transcription factor family
           protein contains Pfam profile: PF00447 HSF-type
           DNA-binding domain
          Length = 466

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 1/77 (1%)

Query: 118 GARTTTP-RPDHFNESIMTESRLVLRINGFRDPTPPIGNGEGLSTAEELVHLRRQIVKLN 176
           G R   P R +  N+  + + + +L+    R P     +    ST +E   L+ Q+ KL+
Sbjct: 83  GFRKIDPERWEFLNDDFIKDQKHLLKNIHRRKPIHSHSHPPASSTDQERAVLQEQMDKLS 142

Query: 177 RRVMSIEADNFKGNRRK 193
           R   +IEA   K  ++K
Sbjct: 143 REKAAIEAKLLKFKQQK 159


>At2g19200.1 68415.m02240 expressed protein contains Pfam profile
           PF04776: Protein of unknown function (DUF626)
          Length = 246

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 14/50 (28%), Positives = 24/50 (48%)

Query: 140 VLRINGFRDPTPPIGNGEGLSTAEELVHLRRQIVKLNRRVMSIEADNFKG 189
           V +I G  +    +GNGE  ++ E +VH  + I  + +  M    D + G
Sbjct: 168 VFKIVGRTESYRSLGNGESTTSRETVVHCSKDIDSMEQSDMHDGFDGYVG 217


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.137    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,443,509
Number of Sequences: 28952
Number of extensions: 254528
Number of successful extensions: 533
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 528
Number of HSP's gapped (non-prelim): 9
length of query: 198
length of database: 12,070,560
effective HSP length: 77
effective length of query: 121
effective length of database: 9,841,256
effective search space: 1190791976
effective search space used: 1190791976
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)