GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001338-TA|BGIBMGA001338-PA|IPR002213|UDP-
glucuronosyl/UDP-glucosyltransferase
         (365 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc...    32   0.15 
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    31   0.34 
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    29   1.4  
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    27   4.2  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    27   4.2  
SPBP4H10.21c |sld5||GINS complex subunit Sld5|Schizosaccharomyce...    27   5.5  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    26   7.3  

>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 31.9 bits (69), Expect = 0.15
 Identities = 36/111 (32%), Positives = 48/111 (43%), Gaps = 8/111 (7%)

Query: 61  SLFAPLATARGVALPPFEEALYNVSVLL-VNSHPAFAPPLSLPPNVVEIAGYHIDPKTPP 119
           S F  L   +    P  +E L N  V   + SHPAF P + +   V    G  ID K  P
Sbjct: 666 SRFDILQVVKDTVNPEIDEQLANFVVSSHIRSHPAFDPNMDVLKKVPTETG--IDAK--P 721

Query: 120 LPKDLQSILDSSPQGVVYFSMGSV--LKSSKLSEQTRRELLDVFGSIPQTV 168
           +P+DL        +  V+  +  +   K S+L    RRE L   GS P TV
Sbjct: 722 IPQDLLRKYIHFAREKVFPRLQQMDEEKISRLYSDMRRESL-ATGSYPITV 771


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 30.7 bits (66), Expect = 0.34
 Identities = 42/163 (25%), Positives = 65/163 (39%), Gaps = 14/163 (8%)

Query: 45  VISDWLDRPKTVAFYESLFAPLATAR--GVALPPFEEALYNVSVLLVN-SHPAFAPPLSL 101
           +++ W  RP   +  E +F+P+ TA+     L      L + S LL N S  +F+ P+  
Sbjct: 104 LLATWKQRPPNSSSLEPVFSPIVTAKIENALLKYKSTILRHQSPLLANTSISSFSAPIDA 163

Query: 102 PPNVVEI---AGYHIDPKTPPLPKDLQSILDSSPQGVVYFSMGSVLKSSKLSEQTRRELL 158
             N             P  P +P   Q I  +SP      S G +   S LS+  R  + 
Sbjct: 164 NINSYSSFSDPASSYKPSLPSVPFGFQHISGTSP------SPGFITLDSLLSDVNRMIVT 217

Query: 159 DV--FGSIPQTVLWKFEEDLQDLPKNVHIRSWMPQSSILAHPN 199
           +   F   P   + K   ++    KNV   S +P   +LA  N
Sbjct: 218 EQARFIKNPYDNMAKKRFEILLQLKNVLSSSALPYDQLLAIKN 260


>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 12/110 (10%)

Query: 51  DRPKTVAFYESLFAPLATARGVALPPFEEALYNVSVLLVNSHPAFAPPLSLPPNVVEIAG 110
           + P T   +E + AP     GV+LPP   +L +     ++S  + +P     P    +  
Sbjct: 310 EAPPTAEPWEPISAPKKQEFGVSLPP---SLASPEKGGISSTTSVSPAAQASP----VLS 362

Query: 111 YHIDPKT-PPLPKDLQSILDSSPQGVVYFSMGSVLKSSKLSEQTRRELLD 159
               PK   P+PK  Q      P  +  FS G ++ +++L E  R +LLD
Sbjct: 363 TTTQPKVQKPVPKAFQ---PKVPMEISPFS-GELVPATELEEHMRLKLLD 408


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 188 WMPQSSILAHPNMKVFITHGGLLSILETLHYGVPILAVP 226
           + P+     H +  + I+H G  SIL+TL  G  +L VP
Sbjct: 63  YAPEIESYIH-DASIVISHAGAGSILQTLRSGKRLLVVP 100


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 72  VALPPFEEALYNVSVLLVNSH 92
           + LPP+EEAL  VS   +N H
Sbjct: 197 IQLPPYEEALSIVSQFFMNDH 217


>SPBP4H10.21c |sld5||GINS complex subunit Sld5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 214

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 14/55 (25%), Positives = 27/55 (49%)

Query: 246 SIEYKPDMAKDMKVALNEMLSDDSYYKRARYLSKIFGDKLVPPAKVISHYVKVAI 300
           S+   PDM   +   +NE + ++       Y++   GD L+    VIS Y+++ +
Sbjct: 156 SMVASPDMDTAVFCVVNESVEENFRVSENEYITLDKGDVLILRYSVISDYLRLGV 210


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 150  SEQTRRELLDVFGSIPQTVLWKFEEDLQDLPKNV 183
            S+  R  L + + ++  TV  KFE D + LP  V
Sbjct: 1002 SQTARENLSNYYQALQMTVSEKFEYDTEQLPSRV 1035


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.135    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,653,209
Number of Sequences: 5004
Number of extensions: 70093
Number of successful extensions: 208
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 204
Number of HSP's gapped (non-prelim): 7
length of query: 365
length of database: 2,362,478
effective HSP length: 74
effective length of query: 291
effective length of database: 1,992,182
effective search space: 579724962
effective search space used: 579724962
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 54 (25.8 bits)