GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001337-TA|BGIBMGA001337-PA|undefined
         (200 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom...    28   1.1  
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe...    26   4.4  
SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyce...    25   5.8  
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy...    25   7.7  

>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 585

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 124 KALAENITRVSLATPALQQAIVQGKYDAVITETFFNDAEAGLVRSLLFRFG 174
           K L++ +T+    T AL+       YDA IT+ F     AG V  L  R+G
Sbjct: 153 KFLSDKLTQDDRNTYALKAFASTASYDAAITDYFRKQYAAG-VDQLTLRYG 202


>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 848

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 12/44 (27%), Positives = 23/44 (52%)

Query: 101 YLSSFLAVDMHEQRNSNTGVSFVKALAENITRVSLATPALQQAI 144
           Y SS+ A+ + E   + +G+SFV +  EN +   +    ++  I
Sbjct: 106 YQSSYPAIQLVENEETTSGISFVISDEENYSLEEIIAMTMEHYI 149


>SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 393

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 165 LVRSLLFRFGGAFSEALLL 183
           ++ S LF+FG  FSEA LL
Sbjct: 237 ILSSYLFQFGDQFSEAFLL 255


>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%)

Query: 49  HEVTWVTPYPPSELAKGLKIVDVSATVSISKSTRDS 84
           HE  W    PP E++K LKI+ +     ISK +  S
Sbjct: 113 HESYWE---PPLEISKDLKILRLPIRKQISKDSSQS 145


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.134    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 798,723
Number of Sequences: 5004
Number of extensions: 29200
Number of successful extensions: 67
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 63
Number of HSP's gapped (non-prelim): 5
length of query: 200
length of database: 2,362,478
effective HSP length: 69
effective length of query: 131
effective length of database: 2,017,202
effective search space: 264253462
effective search space used: 264253462
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)