GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001337-TA|BGIBMGA001337-PA|undefined
         (200 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0963 + 29252961-29252999,29253108-29253179,29253295-292533...    29   1.9  
07_01_0853 + 6982185-6983593,6985926-6986497,6987139-6988439           28   4.5  
08_02_1343 - 26274788-26275019,26275972-26276611,26277174-262783...    28   5.9  
06_03_0793 + 24662506-24663512,24664470-24664787,24664996-246653...    27   7.8  
04_03_0747 - 19251617-19251781,19252377-19252502,19252606-192527...    27   7.8  

>03_05_0963 +
           29252961-29252999,29253108-29253179,29253295-29253369,
           29253500-29253583,29253676-29253745,29253842-29253933,
           29254082-29254123,29254241-29254627
          Length = 286

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 3/88 (3%)

Query: 66  LKIVDVSATVSISKSTRDSGICQISCVVRQLPPFFYLSSFLAVDMHEQRNSNTGVSFVKA 125
           L+  ++  TVS+ +   ++ I  I+ ++R LP     + ++A +  + R S+    F K 
Sbjct: 201 LRTANLYWTVSLQR-LNNNNIESIALILRFLPMLHRSAQWIAFE--DSRGSSLRGLFKKF 257

Query: 126 LAENITRVSLATPALQQAIVQGKYDAVI 153
           L  N   +       ++A++ G YDA++
Sbjct: 258 LEPNDLHLECHLQLARRALLNGPYDALV 285


>07_01_0853 + 6982185-6983593,6985926-6986497,6987139-6988439
          Length = 1093

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 3/69 (4%)

Query: 116 SNTGVSFVKALAENITRVSLATPALQQAIVQGKYDAVITETFFNDAEAGLVRSLLFRFGG 175
           S T V    A   +  R   A+PA       G YD ++      DA  G   +L F  G 
Sbjct: 169 SETPVFAAPAAHRDYIRAGAASPADHNIFATGSYDRIVK---LWDARMGKTSTLSFSHGE 225

Query: 176 AFSEALLLP 184
                L LP
Sbjct: 226 LVESVLFLP 234


>08_02_1343 -
           26274788-26275019,26275972-26276611,26277174-26278367,
           26278515-26278701
          Length = 750

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 67  KIVDVSATVSISKSTRDSGICQISCVVRQLPPFFYLSSFLA-VDMHEQRNSNTGVSFVKA 125
           +I+DV   +  S   RD+   ++   V  L P  Y   ++A V     + +N   S+ +A
Sbjct: 663 EILDVGQFMDPSSEDRDNSRYRLVGFVEHLGPSMYAGHYVAYVRPSPPQQTNGSSSWFRA 722

Query: 126 LAENITRVSL 135
              +IT VSL
Sbjct: 723 SDTDITEVSL 732


>06_03_0793 +
           24662506-24663512,24664470-24664787,24664996-24665323,
           24665465-24665887,24665960-24666252,24666332-24666605,
           24666856-24667358,24667464-24667785,24667875-24668220,
           24668339-24668997,24669524-24669625,24669656-24670052,
           24670155-24670270,24670360-24670386
          Length = 1704

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 103 SSFLAVDMHEQRNSNTGVSFVKALAENITRVSLATPALQQAIVQGKYDAVITET 156
           SSFL V + E    N   S    L+   T  +L  PA+  A+  G YD+ + +T
Sbjct: 922 SSFLTVPLVESEQKNHKSS--SGLSSKRTN-ALQNPAVMAAVRGGSYDSTVAKT 972


>04_03_0747 -
           19251617-19251781,19252377-19252502,19252606-19252716,
           19252931-19253679,19254034-19254167,19254595-19254740,
           19255166-19255336,19255977-19256828
          Length = 817

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 3/67 (4%)

Query: 76  SISKSTRDSGICQISCVVRQLPPFFYLSSFLAVDMHEQRNSNTGVSF---VKALAENITR 132
           S S S R +  C IS   R +       SF+  ++HEQ     G++    + A +E+   
Sbjct: 545 SASTSYRYNAQCSISGTTRAMADERVDPSFVGNNVHEQMQRVQGITMQDHISASSESKRE 604

Query: 133 VSLATPA 139
           +S+ TP+
Sbjct: 605 LSVTTPS 611


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.134    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,465,617
Number of Sequences: 37544
Number of extensions: 203794
Number of successful extensions: 399
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 399
Number of HSP's gapped (non-prelim): 6
length of query: 200
length of database: 14,793,348
effective HSP length: 79
effective length of query: 121
effective length of database: 11,827,372
effective search space: 1431112012
effective search space used: 1431112012
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)